KEGG   PATHWAY: mmae00030
Entry
mmae00030                   Pathway                                
Name
Pentose phosphate pathway - Mycobacterium marinum E11
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmae00030  Pentose phosphate pathway
mmae00030

Module
mmae_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:mmae00030]
mmae_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:mmae00030]
mmae_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:mmae00030]
mmae_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:mmae00030]
Other DBs
GO: 0006098
Organism
Mycobacterium marinum E11 [GN:mmae]
Gene
MMARE11_06190  fba; fructose-bisphosphate aldolase, Fba [KO:K01624] [EC:4.1.2.13]
MMARE11_07520  deoC; deoxyribose-phosphate aldolase DeoC [KO:K01619] [EC:4.1.2.4]
MMARE11_15040  pgmA; phosphoglucomutase PgmA [KO:K01835] [EC:5.4.2.2]
MMARE11_16220  pfkA; 6-phosphofructokinase PfkA [KO:K21071] [EC:2.7.1.11 2.7.1.90]
MMARE11_21390  rpe; ribulose-phosphate 3-epimerase Rpe [KO:K01783] [EC:5.1.3.1]
MMARE11_21720  devB; 6-phosphogluconolactonase DevB [KO:K01057] [EC:3.1.1.31]
MMARE11_21740  zwf2; glucose-6-phosphate 1-dehydrogenase Zwf2 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
MMARE11_21750  tal; transaldolase Tal [KO:K00616] [EC:2.2.1.2]
MMARE11_21760  tkt; transketolase Tkt [KO:K00615] [EC:2.2.1.1]
MMARE11_26390  gnd1; 6-phosphogluconate dehydrogenase Gnd1 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
MMARE11_26630  xfp; D-xylulose 5-phosphate Xfp [KO:K01621] [EC:4.1.2.9 4.1.2.22]
MMARE11_33180  pfkA_1; 6-phosphofructokinase PfkA_1 [KO:K21071] [EC:2.7.1.11 2.7.1.90]
MMARE11_33940  pfkB_1; phosphofructokinase, PfkB_1 [KO:K16370] [EC:2.7.1.11]
MMARE11_36960  rpiB; ribose/galactose isomerase RpiB [KO:K01808] [EC:5.3.1.6]
MMARE11_41570  gnd2; 6-phosphogluconate dehydrogenase, decarboxylating Gnd2 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
MMARE11_41580  zwf1; glucose-6-phosphate 1-dehydrogenase Zwf1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
MMARE11_41870  glpX; fructose 1,6-bisphosphatase GlpX [KO:K02446] [EC:3.1.3.11]
MMARE11_42830  prsA; ribose-phosphate pyrophosphokinase PrsA [KO:K00948] [EC:2.7.6.1]
MMARE11_43700  pgi; glucose-6-phosphate isomerase Pgi [KO:K01810] [EC:5.3.1.9]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
mmae00010  Glycolysis / Gluconeogenesis
mmae00040  Pentose and glucuronate interconversions
mmae00052  Galactose metabolism
mmae00230  Purine metabolism
mmae00240  Pyrimidine metabolism
mmae00340  Histidine metabolism
mmae00630  Glyoxylate and dicarboxylate metabolism
mmae00750  Vitamin B6 metabolism
KO pathway
ko00030   

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