KEGG   PATHWAY: mmat00030
Entry
mmat00030                   Pathway                                
Name
Pentose phosphate pathway - Mycolicibacterium mageritense
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmat00030  Pentose phosphate pathway
mmat00030

Module
mmat_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:mmat00030]
mmat_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:mmat00030]
mmat_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:mmat00030]
mmat_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:mmat00030]
mmat_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:mmat00030]
mmat_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:mmat00030]
Other DBs
GO: 0006098
Organism
Mycolicibacterium mageritense [GN:mmat]
Gene
MMAGJ_09090  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
MMAGJ_74060  zwf_4; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
MMAGJ_19020  zwf_1; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
MMAGJ_41750  zwf_2; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
MMAGJ_61180  zwf_3; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
MMAGJ_61160  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
MMAGJ_74210  gnd_2; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
MMAGJ_24390  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
MMAGJ_66650  gnd_1; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
MMAGJ_74010  rpe_2; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
MMAGJ_36240  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
MMAGJ_60790  rpe_1; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
MMAGJ_66340  hypothetical protein [KO:K01783] [EC:5.1.3.1]
MMAGJ_74030  tktA; transketolase [KO:K00615] [EC:2.2.1.1]
MMAGJ_36230  tkt_1; transketolase [KO:K00615] [EC:2.2.1.1]
MMAGJ_36840  transketolase [KO:K00615] [EC:2.2.1.1]
MMAGJ_36850  putative uncharacterized transketolase family protein y4mN [KO:K00615] [EC:2.2.1.1]
MMAGJ_61200  tkt_2; transketolase [KO:K00615] [EC:2.2.1.1]
MMAGJ_74020  talA; transaldolase [KO:K00616] [EC:2.2.1.2]
MMAGJ_37020  tal_1; transaldolase [KO:K00616] [EC:2.2.1.2]
MMAGJ_61190  tal_2; transaldolase [KO:K00616] [EC:2.2.1.2]
MMAGJ_74000  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
MMAGJ_77300  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
MMAGJ_63090  derI1; D-erythrulose-4-phosphate isomerase 1 [KO:K01808] [EC:5.3.1.6]
MMAGJ_74070  hxlA; 3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
MMAGJ_12220  3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
MMAGJ_73880  hxlB_1; 3-hexulose-6-phosphate isomerase [KO:K08094] [EC:5.3.1.27]
MMAGJ_74080  hxlB_2; 3-hexulose-6-phosphate isomerase [KO:K08094] [EC:5.3.1.27]
MMAGJ_12230  6-phospho 3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
MMAGJ_66410  xfp; putative phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
MMAGJ_38050  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
MMAGJ_76560  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
MMAGJ_50740  pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
MMAGJ_07320  prs; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
MMAGJ_12290  hypothetical protein [KO:K00948] [EC:2.7.6.1]
MMAGJ_19030  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
MMAGJ_19040  eda_1; 2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
MMAGJ_69910  eda_2; 2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
MMAGJ_41470  gluconolactonase [KO:K01053] [EC:3.1.1.17]
MMAGJ_62900  aroK_2; gluconokinase [KO:K00851] [EC:2.7.1.12]
MMAGJ_12210  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
MMAGJ_69880  carbohydrate kinase [KO:K00874] [EC:2.7.1.45]
MMAGJ_36270  fbaB; fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
MMAGJ_65370  class I fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
MMAGJ_73990  fba; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
MMAGJ_13330  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
MMAGJ_21340  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
MMAGJ_05750  glpX; fructose-1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
MMAGJ_36650  fbp; fructose-1,6-bisphosphatase class 1 [KO:K01086] [EC:3.1.3.11 3.1.3.37]
MMAGJ_67320  hypothetical protein [KO:K16370] [EC:2.7.1.11]
MMAGJ_73910  pfkA_2; ATP-dependent 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
MMAGJ_53450  pfkA_1; ATP-dependent 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
mmat00010  Glycolysis / Gluconeogenesis
mmat00040  Pentose and glucuronate interconversions
mmat00052  Galactose metabolism
mmat00230  Purine metabolism
mmat00240  Pyrimidine metabolism
mmat00340  Histidine metabolism
mmat00630  Glyoxylate and dicarboxylate metabolism
mmat00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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