KEGG   PATHWAY: msv00030
Entry
msv00030                    Pathway                                
Name
Pentose phosphate pathway - Allomeiothermus silvanus
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msv00030  Pentose phosphate pathway
msv00030

Module
msv_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:msv00030]
msv_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:msv00030]
msv_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:msv00030]
msv_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:msv00030]
Other DBs
GO: 0006098
Organism
Allomeiothermus silvanus [GN:msv]
Gene
Mesil_0617  phosphoglucose isomerase (PGI) [KO:K01810] [EC:5.3.1.9]
Mesil_3140  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Mesil_2480  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Mesil_2481  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
Mesil_2478  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Mesil_2075  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Mesil_3251  ketose-bisphosphate aldolase class-II [KO:K01783] [EC:5.1.3.1]
Mesil_2023  transketolase [KO:K00615] [EC:2.2.1.1]
Mesil_3263  hypothetical protein [KO:K00615] [EC:2.2.1.1]
Mesil_1103  Transaldolase [KO:K00616] [EC:2.2.1.2]
Mesil_2037  transaldolase [KO:K00616] [EC:2.2.1.2]
Mesil_1813  ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
Mesil_3056  sugar isomerase (SIS) [KO:K08094] [EC:5.3.1.27]
Mesil_2600  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
Mesil_2961  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
Mesil_0220  ribokinase [KO:K00852] [EC:2.7.1.15]
Mesil_2615  PfkB domain protein [KO:K00852] [EC:2.7.1.15]
Mesil_2001  PfkB domain protein [KO:K00852] [EC:2.7.1.15]
Mesil_0150  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
Mesil_0294  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
Mesil_0764  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Mesil_2735  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Mesil_0983  carbohydrate kinase, thermoresistant glucokinase family [KO:K00851] [EC:2.7.1.12]
Mesil_1425  Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Mesil_0759  fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
Mesil_3250  hypothetical protein [KO:K01624] [EC:4.1.2.13]
Mesil_2164  fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
Mesil_3256  hypothetical protein [KO:K02446] [EC:3.1.3.11]
Mesil_0169  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Mesil_3101  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
msv00010  Glycolysis / Gluconeogenesis
msv00040  Pentose and glucuronate interconversions
msv00052  Galactose metabolism
msv00230  Purine metabolism
msv00240  Pyrimidine metabolism
msv00340  Histidine metabolism
msv00630  Glyoxylate and dicarboxylate metabolism
msv00750  Vitamin B6 metabolism
KO pathway
ko00030   
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