KEGG   PATHWAY: mthr00020
Entry
mthr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanosarcina thermophila TM-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mthr00020  Citrate cycle (TCA cycle)
mthr00020

Module
mthr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mthr00020]
mthr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mthr00020]
Other DBs
GO: 0006099
Organism
Methanosarcina thermophila TM-1 [GN:mthr]
Gene
MSTHT_2038  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
MSTHT_1587  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
MSTHT_2037  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MSTHT_1588  3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MSTHT_2526  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSTHT_2525  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSTHT_0862  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MSTHT_0863  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
MSTHT_0552  Fumarate hydratase class I, aerobic [KO:K01677] [EC:4.2.1.2]
MSTHT_0553  Fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
MSTHT_0864  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MSTHT_1283  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MSTHT_2234  Pyruvate carboxyl transferase subunit A [KO:K01959] [EC:6.4.1.1]
MSTHT_2233  Pyruvate carboxyl transferase subunit B [KO:K01960] [EC:6.4.1.1]
MSTHT_1843  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MSTHT_0761  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSTHT_1842  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MSTHT_1845  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MSTHT_1844  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mthr00010  Glycolysis / Gluconeogenesis
mthr00061  Fatty acid biosynthesis
mthr00071  Fatty acid degradation
mthr00190  Oxidative phosphorylation
mthr00220  Arginine biosynthesis
mthr00250  Alanine, aspartate and glutamate metabolism
mthr00280  Valine, leucine and isoleucine degradation
mthr00350  Tyrosine metabolism
mthr00470  D-Amino acid metabolism
mthr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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