KEGG   PATHWAY: ncs00020
Entry
ncs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Naumovozyma castellii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ncs00020  Citrate cycle (TCA cycle)
ncs00020

Module
ncs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ncs00020]
ncs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ncs00020]
ncs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ncs00020]
ncs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ncs00020]
ncs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ncs00020]
Other DBs
GO: 0006099
Organism
Naumovozyma castellii [GN:ncs]
Gene
NCAS_0B04750  NCAS0B04750; hypothetical protein [KO:K01647] [EC:2.3.3.1]
NCAS_0C05050  NCAS0C05050; hypothetical protein [KO:K01647] [EC:2.3.3.1]
NCAS_0A05920  NCAS0A05920; hypothetical protein [KO:K01681] [EC:4.2.1.3]
NCAS_0A02510  NCAS0A02510; hypothetical protein [KO:K00031] [EC:1.1.1.42]
NCAS_0A08720  NCAS0A08720; hypothetical protein [KO:K00031] [EC:1.1.1.42]
NCAS_0G03620  NCAS0G03620; hypothetical protein [KO:K00031] [EC:1.1.1.42]
NCAS_0B06290  NCAS0B06290; hypothetical protein [KO:K00030] [EC:1.1.1.41]
NCAS_0H02250  NCAS0H02250; hypothetical protein [KO:K00030] [EC:1.1.1.41]
NCAS_0B06520  NCAS0B06520; hypothetical protein [KO:K00164] [EC:1.2.4.2]
NCAS_0B03620  NCAS0B03620; hypothetical protein [KO:K00658] [EC:2.3.1.61]
NCAS_0J00500  NCAS0J00500; hypothetical protein [KO:K00382] [EC:1.8.1.4]
NCAS_0H02300  NCAS0H02300; hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
NCAS_0E03800  NCAS0E03800; hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
NCAS_0F02320  NCAS0F02320; hypothetical protein [KO:K00234] [EC:1.3.5.1]
NCAS_0A02980  NCAS0A02980; hypothetical protein [KO:K00235] [EC:1.3.5.1]
NCAS_0C05870  NCAS0C05870; hypothetical protein [KO:K00235] [EC:1.3.5.1]
NCAS_0A04200  NCAS0A04200; hypothetical protein [KO:K00236]
NCAS_0B03140  NCAS0B03140; hypothetical protein [KO:K00237]
NCAS_0D02620  NCAS0D02620; hypothetical protein [KO:K01679] [EC:4.2.1.2]
NCAS_0A04020  NCAS0A04020; hypothetical protein [KO:K00026] [EC:1.1.1.37]
NCAS_0C04560  NCAS0C04560; hypothetical protein [KO:K00026] [EC:1.1.1.37]
NCAS_0H03320  NCAS0H03320; hypothetical protein [KO:K00026] [EC:1.1.1.37]
NCAS_0H01470  NCAS0H01470; hypothetical protein [KO:K01958] [EC:6.4.1.1]
NCAS_0D03180  NCAS0D03180; hypothetical protein [KO:K01958] [EC:6.4.1.1]
NCAS_0A03160  NCAS0A03160; hypothetical protein [KO:K01610] [EC:4.1.1.49]
NCAS_0B04930  NCAS0B04930; hypothetical protein [KO:K00161] [EC:1.2.4.1]
NCAS_0H01420  NCAS0H01420; hypothetical protein [KO:K00162] [EC:1.2.4.1]
NCAS_0G02900  NCAS0G02900; hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ncs00010  Glycolysis / Gluconeogenesis
ncs00053  Ascorbate and aldarate metabolism
ncs00061  Fatty acid biosynthesis
ncs00062  Fatty acid elongation
ncs00071  Fatty acid degradation
ncs00190  Oxidative phosphorylation
ncs00220  Arginine biosynthesis
ncs00250  Alanine, aspartate and glutamate metabolism
ncs00280  Valine, leucine and isoleucine degradation
ncs00350  Tyrosine metabolism
ncs00470  D-Amino acid metabolism
ncs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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