KEGG   PATHWAY: nfi00020
Entry
nfi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aspergillus fischeri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nfi00020  Citrate cycle (TCA cycle)
nfi00020

Module
nfi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nfi00020]
nfi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nfi00020]
nfi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nfi00020]
nfi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nfi00020]
nfi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nfi00020]
Other DBs
GO: 0006099
Organism
Aspergillus fischeri [GN:nfi]
Gene
NFIA_050100  citrate synthase Cit1, putative [KO:K01647] [EC:2.3.3.1]
NFIA_037870  citrate synthase (Cit1), putative [KO:K01647] [EC:2.3.3.1]
NFIA_090540  citrate synthase [KO:K01647] [EC:2.3.3.1]
NFIA_056430  ATP citrate lyase subunit (Acl), putatibe [KO:K01648] [EC:2.3.3.8]
NFIA_056420  ATP citrate lyase, subunit 1, putative [KO:K01648] [EC:2.3.3.8]
NFIA_058870  mitochondrial aconitate hydratase, putative [KO:K01681] [EC:4.2.1.3]
NFIA_068460  isocitrate dehydrogenase Idp1, putative [KO:K00031] [EC:1.1.1.42]
NFIA_012760  isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
NFIA_052000  NAD(+)-isocitrate dehydrogenase subunit I [KO:K00030] [EC:1.1.1.41]
NFIA_104560  alpha-ketoglutarate dehydrogenase complex subunit Kgd1, putative [KO:K00164] [EC:1.2.4.2]
NFIA_071820  dihydrolipoamide succinyltransferase, putative [KO:K00658] [EC:2.3.1.61]
NFIA_034470  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NFIA_036970  succinyl-CoA synthetase alpha subunit, putative [KO:K01899] [EC:6.2.1.4 6.2.1.5]
NFIA_014810  CoA-ligase, putative [KO:K01899] [EC:6.2.1.4 6.2.1.5]
NFIA_028840  succinyl-CoA synthetase beta subunit, putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
NFIA_045340  succinyl-CoA synthetase beta chain [KO:K01900] [EC:6.2.1.4 6.2.1.5]
NFIA_069350  succinate dehydrogenase, flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
NFIA_076860  iron-sulfur protein subunit of succinate dehydrogenase Sdh2, putative [KO:K00235] [EC:1.3.5.1]
NFIA_077630  succinate dehydrogenase cytochrome b560 subunit [KO:K00236]
NFIA_001520  Cytochrome b subunit of succinate dehydrogenase, putative [KO:K00236]
NFIA_009730  succinate dehydrogenase subunit CybS, putative [KO:K00237]
NFIA_048750  fumarate hydratase, putative [KO:K01679] [EC:4.2.1.2]
NFIA_051790  malate dehydrogenase, NAD-dependent [KO:K00026] [EC:1.1.1.37]
NFIA_026980  malate dehydrogenase, NAD-dependent [KO:K00026] [EC:1.1.1.37]
NFIA_108470  pyruvate carboxylase, putative [KO:K01958] [EC:6.4.1.1]
NFIA_053390  phosphoenolpyruvate carboxykinase AcuF [KO:K01610] [EC:4.1.1.49]
NFIA_017730  pyruvate dehydrogenase E1 component alpha subunit, putative [KO:K00161] [EC:1.2.4.1]
NFIA_081600  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
NFIA_006440  pyruvate dehydrogenase E1 beta subunit PdbA, putative [KO:K00162] [EC:1.2.4.1]
NFIA_026950  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nfi00010  Glycolysis / Gluconeogenesis
nfi00053  Ascorbate and aldarate metabolism
nfi00061  Fatty acid biosynthesis
nfi00062  Fatty acid elongation
nfi00071  Fatty acid degradation
nfi00190  Oxidative phosphorylation
nfi00220  Arginine biosynthesis
nfi00250  Alanine, aspartate and glutamate metabolism
nfi00280  Valine, leucine and isoleucine degradation
nfi00350  Tyrosine metabolism
nfi00470  D-Amino acid metabolism
nfi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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