KEGG   PATHWAY: npd03430
Entry
npd03430                    Pathway                                
Name
Mismatch repair - Nothoprocta perdicaria (Chilean tinamou)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
npd03430  Mismatch repair
npd03430

Other DBs
GO: 0006298
Organism
Nothoprocta perdicaria (Chilean tinamou) [GN:npd]
Gene
112942886  RFC3; replication factor C subunit 3 [KO:K10756]
112943991  MSH3; DNA mismatch repair protein Msh3 [KO:K08736]
112944767  RPA3; replication protein A 14 kDa subunit [KO:K10740]
112945634  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
112945924  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
112949168  POLD3; DNA polymerase delta subunit 3 [KO:K03504]
112950377  RFC5; replication factor C subunit 5 [KO:K10756]
112950905  PCNA; proliferating cell nuclear antigen [KO:K04802]
112951883  RPA2; replication protein A 32 kDa subunit [KO:K10739]
112952024  EXO1; exonuclease 1 [KO:K10746] [EC:3.1.-.-]
112952555  RFC4; replication factor C subunit 4 [KO:K10755]
112954082  LIG1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
112954583  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
112954822  MSH2; DNA mismatch repair protein Msh2 [KO:K08735]
112954831  MSH6; DNA mismatch repair protein Msh6 [KO:K08737]
112956724  RFC2; replication factor C subunit 2 [KO:K10755]
112957949  MLH3; DNA mismatch repair protein Mlh3 isoform X1 [KO:K08739]
112958495  MLH1; DNA mismatch repair protein Mlh1 [KO:K08734]
112959831  PMS2; mismatch repair endonuclease PMS2 [KO:K10858]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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