KEGG   PATHWAY: nph00010
Entry
nph00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Natronomonas pharaonis
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nph00010  Glycolysis / Gluconeogenesis
nph00010

Module
nph_M00002  Glycolysis, core module involving three-carbon compounds [PATH:nph00010]
nph_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nph00010]
Other DBs
GO: 0006096 0006094
Organism
Natronomonas pharaonis [GN:nph]
Gene
NP_0012A  gap; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)) (phosphorylating) [KO:K00150] [EC:1.2.1.59]
NP_0104A  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NP_0164A  acs5; acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
NP_0556A  dsa; dihydrolipoamide S-acyltransferase [KO:K00627] [EC:2.3.1.12]
NP_0558A  oxdhB; 2-oxo-3-methylvalerate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
NP_0560A  oxdhA1; 2-oxo-3-methylvalerate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
NP_1196A  ppsA; phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
NP_1232A  korA; oxoglutarate--ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NP_1234A  korB1; oxoglutarate--ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NP_1260A  adh; alcohol dehydrogenase [KO:K00001] [EC:1.1.1.1]
NP_1592A  fbp; fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
NP_1594A  fba1; fructose-bisphosphate aldolase, class 1 [KO:K11645] [EC:4.1.2.13]
NP_1746A  pykA; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
NP_1964A  gpmI; phosphoglycerate mutase, 2,3-biphosphateglycerate-independent type [KO:K15633] [EC:5.4.2.12]
NP_2182A  tpiA1; triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
NP_2542A  oxdhA2; probable 2-oxoacid dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
NP_2846A  eno; enolase [KO:K01689] [EC:4.2.1.11]
NP_2858A  acdA; acetate--CoA ligase (ADP-forming) [KO:K24012]
NP_3012A  korB2; oxoglutarate--ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NP_3020A  aldH2; aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
NP_3160A  fba2; 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [KO:K16306] [EC:4.1.2.13 2.2.1.10]
NP_3716A  tpiA2; triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
NP_4044A  porB; pyruvate--ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
NP_4046A  porA; pyruvate--ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
NP_4130A  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
NP_4240A  acs1; acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
NP_4242A  acs2; acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
NP_4992A  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
NP_5128A  acs3; acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
NP_5132A  acs4; acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
NP_5158A  pmm4; phosphohexomutase (phosphoglucomutase / phosphomannomutase) [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nph00020  Citrate cycle (TCA cycle)
nph00030  Pentose phosphate pathway
nph00500  Starch and sucrose metabolism
nph00620  Pyruvate metabolism
nph00640  Propanoate metabolism
nph00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   

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