KEGG   PATHWAY: oci00020
Entry
oci00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oceanihabitans sp. IOP_32
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oci00020  Citrate cycle (TCA cycle)
oci00020

Module
oci_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oci00020]
oci_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oci00020]
oci_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oci00020]
Other DBs
GO: 0006099
Organism
Oceanihabitans sp. IOP_32 [GN:oci]
Gene
FEZ18_02960  citrate synthase [KO:K01647] [EC:2.3.3.1]
FEZ18_09630  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FEZ18_01615  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FEZ18_05520  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FEZ18_05525  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FEZ18_10675  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
FEZ18_11820  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FEZ18_12070  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FEZ18_13890  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FEZ18_14490  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FEZ18_09335  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FEZ18_07935  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FEZ18_09330  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FEZ18_07940  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FEZ18_07930  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FEZ18_13825  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FEZ18_03935  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FEZ18_08850  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FEZ18_09805  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FEZ18_08845  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oci00010  Glycolysis / Gluconeogenesis
oci00053  Ascorbate and aldarate metabolism
oci00061  Fatty acid biosynthesis
oci00071  Fatty acid degradation
oci00190  Oxidative phosphorylation
oci00220  Arginine biosynthesis
oci00250  Alanine, aspartate and glutamate metabolism
oci00280  Valine, leucine and isoleucine degradation
oci00350  Tyrosine metabolism
oci00470  D-Amino acid metabolism
oci00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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