KEGG   PATHWAY: aalt00020
Entry
aalt00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alternaria alternata
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aalt00020  Citrate cycle (TCA cycle)
aalt00020

Module
aalt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aalt00020]
aalt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aalt00020]
Other DBs
GO: 0006099
Organism
Alternaria alternata [GN:aalt]
Gene
CC77DRAFT_1005031  citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
CC77DRAFT_250650  citrate synthase [KO:K01647] [EC:2.3.3.1]
CC77DRAFT_986135  ATP-citrate synthase-like protein subunit 1 [KO:K01648] [EC:2.3.3.8]
CC77DRAFT_784023  ATP-citrate synthase (ATP-citrate (pro-S-)-lyase) [KO:K01648] [EC:2.3.3.8]
CC77DRAFT_1016638  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CC77DRAFT_930092  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CC77DRAFT_1056855  isocitrate dehydrogenase NADP-dependent [KO:K00031] [EC:1.1.1.42]
CC77DRAFT_1062539  isocitrate dehydrogenase subunit 2 mitochondrial precursor [KO:K00030] [EC:1.1.1.41]
CC77DRAFT_1020065  isocitrate dehydrogenase subunit 1 mitochondrial precursor [KO:K00030] [EC:1.1.1.41]
CC77DRAFT_1040647  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
CC77DRAFT_1016841  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CC77DRAFT_97701  succinyl-CoA ligase subunit alpha [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CC77DRAFT_1060835  succinyl-CoA ligase subunit alpha [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CC77DRAFT_1024095  succinate-CoA ligase [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CC77DRAFT_1025328  succinate dehydrogenase flavo protein subunit mitochondrial precursor [KO:K00234] [EC:1.3.5.1]
CC77DRAFT_979964  succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
CC77DRAFT_1020093  mitochondrial succinate dehydrogenase iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
CC77DRAFT_1018443  mitochondrial succinate dehydrogenase cytochrome b560 subunit C [KO:K00236]
CC77DRAFT_999568  mitochondrial succinate dehydrogenase cytochrome b560 subunit D [KO:K00237]
CC77DRAFT_946367  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CC77DRAFT_936963  malate dehydrogenase-like protein [KO:K00026] [EC:1.1.1.37]
CC77DRAFT_938580  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CC77DRAFT_1020016  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CC77DRAFT_1021809  hypothetical protein [KO:K01610] [EC:4.1.1.49]
CC77DRAFT_925784  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CC77DRAFT_1012555  hypothetical protein [KO:K00162] [EC:1.2.4.1]
CC77DRAFT_938523  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aalt00010  Glycolysis / Gluconeogenesis
aalt00053  Ascorbate and aldarate metabolism
aalt00061  Fatty acid biosynthesis
aalt00062  Fatty acid elongation
aalt00071  Fatty acid degradation
aalt00190  Oxidative phosphorylation
aalt00220  Arginine biosynthesis
aalt00250  Alanine, aspartate and glutamate metabolism
aalt00280  Valine, leucine and isoleucine degradation
aalt00350  Tyrosine metabolism
aalt00470  D-Amino acid metabolism
aalt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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