KEGG   PATHWAY: achb00630
Entry
achb00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Achromobacter sp. B7
Class
Metabolism; Carbohydrate metabolism
Pathway map
achb00630  Glyoxylate and dicarboxylate metabolism
achb00630

Module
achb_M00012  Glyoxylate cycle [PATH:achb00630]
achb_M00621  Glycine cleavage system [PATH:achb00630]
Other DBs
GO: 0046487 0043648
Organism
Achromobacter sp. B7 [GN:achb]
Gene
DVB37_17600  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
DVB37_06150  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
DVB37_09550  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
DVB37_21175  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
DVB37_27435  malate synthase G [KO:K01638] [EC:2.3.3.9]
DVB37_06375  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DVB37_06410  citrate synthase [KO:K01647] [EC:2.3.3.1]
DVB37_25700  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
DVB37_22465  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DVB37_17920  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DVB37_17875  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DVB37_26005  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
DVB37_17820  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
DVB37_15025  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
DVB37_18235  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
DVB37_11710  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
DVB37_00515  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
DVB37_24340  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
DVB37_05405  SDR family oxidoreductase [KO:K00023] [EC:1.1.1.36]
DVB37_06615  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
DVB37_13650  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
DVB37_07650  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
DVB37_07655  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
DVB37_07660  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
DVB37_28240  catalase [KO:K03781] [EC:1.11.1.6]
DVB37_14745  catalase [KO:K03781] [EC:1.11.1.6]
DVB37_24775  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
DVB37_00115  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
DVB37_03200  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
DVB37_05925  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
DVB37_26345  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
DVB37_01640  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
DVB37_11995  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
DVB37_28075  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
DVB37_04620  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
DVB37_02840  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
DVB37_24210  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
DVB37_24220  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
DVB37_06490  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DVB37_09960  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DVB37_10305  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DVB37_25545  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DVB37_12585  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DVB37_24215  gcvH; glycine cleavage system protein GcvH [KO:K02437]
DVB37_03840  glycerate kinase [KO:K00865] [EC:2.7.1.165]
DVB37_08295  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
DVB37_22100  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
DVB37_04215  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
DVB37_21925  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
DVB37_01540  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
DVB37_01545  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
DVB37_21915  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
DVB37_21910  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
DVB37_01550  fdxH; formate dehydrogenase subunit beta [KO:K00124]
DVB37_21905  formate dehydrogenase subunit gamma [KO:K00127]
DVB37_01555  formate dehydrogenase subunit gamma [KO:K00127]
DVB37_23440  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
DVB37_23445  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
DVB37_01985  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
DVB37_07050  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
DVB37_04125  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
DVB37_17170  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
DVB37_09845  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
achb00010  Glycolysis / Gluconeogenesis
achb00020  Citrate cycle (TCA cycle)
achb00030  Pentose phosphate pathway
achb00053  Ascorbate and aldarate metabolism
achb00071  Fatty acid degradation
achb00230  Purine metabolism
achb00250  Alanine, aspartate and glutamate metabolism
achb00260  Glycine, serine and threonine metabolism
achb00620  Pyruvate metabolism
achb00710  Carbon fixation by Calvin cycle
achb00750  Vitamin B6 metabolism
achb00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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