KEGG   PATHWAY: achc03008
Entry
achc03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Aquila chrysaetos chrysaetos (golden eagle)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
achc03008  Ribosome biogenesis in eukaryotes
achc03008

Organism
Aquila chrysaetos chrysaetos (golden eagle) [GN:achc]
Gene
115339175  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
115345901  CSNK2A2; casein kinase II subunit alpha' isoform X1 [KO:K03097] [EC:2.7.11.1]
115340318  LOW QUALITY PROTEIN: casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
115337235  NOL6; LOW QUALITY PROTEIN: nucleolar protein 6 [KO:K14544]
115352706  RRP7A; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
115349963  WDR43; WD repeat-containing protein 43 [KO:K14546]
115346375  UTP4; U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
115337270  UTP15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
115350355  HEATR1; HEAT repeat-containing protein 1 isoform X1 [KO:K14550]
115342917  WDR75; WD repeat-containing protein 75 isoform X1 [KO:K14552]
115341319  UTP18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
115337067  WDR36; WD repeat-containing protein 36 isoform X1 [KO:K14554]
115335926  TBL3; transducin beta-like protein 3 [KO:K14555]
115343848  WDR3; WD repeat-containing protein 3 [KO:K14556]
115341829  UTP6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
115343781  PWP2; periodic tryptophan protein 2 homolog [KO:K14558]
115342002  MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
115351009  IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
115334232  TCOF1; treacle protein isoform X1 [KO:K14562]
115338091  NOP56; nucleolar protein 56 [KO:K14564]
115342943  NOP58; nucleolar protein 58 [KO:K14565]
115352632  SNU13; NHP2-like protein 1 [KO:K12845]
115333570  DKC1; H/ACA ribonucleoprotein complex subunit DKC1 [KO:K11131] [EC:5.4.99.-]
115334122  NHP2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
115341762  GAR1; H/ACA ribonucleoprotein complex subunit 1 isoform X1 [KO:K11128]
115337628  NOP10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
115336771  FCF1; rRNA-processing protein FCF1 homolog isoform X1 [KO:K14566]
115333741  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
115352897  DROSHA; ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
115343497  EMG1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
115348270  BMS1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
115351718  NAT10; RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
115337114  RCL1; RNA 3'-terminal phosphate cyclase-like protein isoform X1 [KO:K11108]
115340632  POP1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
115339416  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
115346041  POP4; ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
115345452  POP5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
115337395  RPP25L; ribonuclease P protein subunit p25-like protein isoform X1 [KO:K14525] [EC:3.1.26.5]
115341474  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
115348391  RPP30; ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
115352892  RPP40; ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
115341288  uncharacterized protein LOC115341288 [KO:K14530] [EC:3.1.26.5]
115335573  REXO5; RNA exonuclease 5 isoform X2 [KO:K14570] [EC:3.1.-.-]
115349070  REXO1; RNA exonuclease 1 homolog isoform X1 [KO:K14570] [EC:3.1.-.-]
115344738  REXO2; oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
115346761  XRN1; 5'-3' exoribonuclease 1 isoform X13 [KO:K12618] [EC:3.1.13.-]
115344892  XRN2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
115339624  GTPBP4; nucleolar GTP-binding protein 1 [KO:K06943]
115351647  GNL2; nucleolar GTP-binding protein 2 isoform X1 [KO:K14537]
115333303  GNL3; guanine nucleotide-binding protein-like 3 isoform X1 [KO:K14538]
115338217  GNL3L; guanine nucleotide-binding protein-like 3-like protein isoform X1 [KO:K14538]
115349820  NVL; nuclear valosin-containing protein-like isoform X1 [KO:K14571]
115347953  MDN1; midasin [KO:K14572]
115345931  NOB1; RNA-binding protein NOB1 [KO:K11883]
115345463  RAN; GTP-binding nuclear protein Ran [KO:K07936]
115344702  XPO1; exportin-1 isoform X1 [KO:K14290]
115346993  NMD3; 60S ribosomal export protein NMD3 [KO:K07562]
115338460  NXF1; nuclear RNA export factor 1 [KO:K14284]
115333731  NXT2; NTF2-related export protein 2 isoform X2 [KO:K14285]
115340005  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
115347098  SBDS; ribosome maturation protein SBDS [KO:K14574]
115341200  EFL1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
115347238  LSG1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
115343488  SPATA5; ATPase family protein 2 homolog isoform X1 [KO:K14575]
115336720  AK6; adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
115352987  RIOK1; serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
115347809  5S ribosomal RNA [KO:K01981]
115347815  5S ribosomal RNA [KO:K01981]
115347810  small nucleolar RNA U3 [KO:K14483]
115347873  small nucleolar RNA U3 [KO:K14483]
115347811  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
achc03010  Ribosome
KO pathway
ko03008   
LinkDB

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