KEGG   PATHWAY: acol00020
Entry
acol00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Anaerotruncus colihominis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acol00020  Citrate cycle (TCA cycle)
acol00020

Module
acol_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acol00020]
acol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acol00020]
acol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acol00020]
Other DBs
GO: 0006099
Organism
Anaerotruncus colihominis [GN:acol]
Gene
K5I23_14670  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
K5I23_04895  citrate synthase [KO:K01647] [EC:2.3.3.1]
K5I23_08250  hydratase [KO:K01681] [EC:4.2.1.3]
K5I23_03950  isocitrate/isopropylmalate family dehydrogenase [KO:K00030] [EC:1.1.1.41]
K5I23_04160  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K5I23_00490  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K5I23_00485  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K5I23_00480  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
K5I23_00495  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
K5I23_14590  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
K5I23_15515  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
K5I23_16050  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
K5I23_14770  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
K5I23_14605  hypothetical protein [KO:K00024] [EC:1.1.1.37]
K5I23_07735  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
K5I23_14620  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
K5I23_00915  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
K5I23_14625  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
K5I23_00920  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
K5I23_14610  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
K5I23_00905  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
K5I23_14615  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
K5I23_00910  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
K5I23_08050  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acol00010  Glycolysis / Gluconeogenesis
acol00053  Ascorbate and aldarate metabolism
acol00061  Fatty acid biosynthesis
acol00071  Fatty acid degradation
acol00190  Oxidative phosphorylation
acol00220  Arginine biosynthesis
acol00250  Alanine, aspartate and glutamate metabolism
acol00280  Valine, leucine and isoleucine degradation
acol00350  Tyrosine metabolism
acol00470  D-Amino acid metabolism
acol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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