KEGG   PATHWAY: acra00630
Entry
acra00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Acidovorax sp. RAC01
Class
Metabolism; Carbohydrate metabolism
Pathway map
acra00630  Glyoxylate and dicarboxylate metabolism
acra00630

Module
acra_M00012  Glyoxylate cycle [PATH:acra00630]
acra_M00621  Glycine cleavage system [PATH:acra00630]
Other DBs
GO: 0046487 0043648
Organism
Acidovorax sp. RAC01 [GN:acra]
Gene
BSY15_3958  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
BSY15_48  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
BSY15_1125  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
BSY15_252  malate dehydrogenase family protein [KO:K00024] [EC:1.1.1.37]
BSY15_259  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BSY15_484  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BSY15_249  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BSY15_898  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
BSY15_2193  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
BSY15_2091  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
BSY15_3132  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
BSY15_3201  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
BSY15_3417  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
BSY15_3418  phbB-1; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
BSY15_3438  accC; acetyl-CoA carboxylase, biotin carboxylase subunit [KO:K01965] [EC:6.4.1.3]
BSY15_3436  carboxyl transferase domain protein [KO:K01966] [EC:6.4.1.3 2.1.3.15]
BSY15_3434  hypothetical protein [KO:K01847] [EC:5.4.99.2]
BSY15_1841  FAD binding domain protein [KO:K00104] [EC:1.1.99.14]
BSY15_1669  FAD binding domain protein [KO:K11472] [EC:1.1.99.14]
BSY15_1671  4Fe-4S binding domain protein [KO:K11473] [EC:1.1.99.14]
BSY15_2212  catalase family protein [KO:K03781] [EC:1.11.1.6]
BSY15_2563  catalase family protein [KO:K03781] [EC:1.11.1.6]
BSY15_863  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BSY15_3904  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BSY15_1076  gph; phosphoglycolate phosphatase, bacterial [KO:K01091] [EC:3.1.3.18]
BSY15_2587  HAD hydrolase, IA, variant 1 family protein [KO:K01091] [EC:3.1.3.18]
BSY15_2841  glnA; glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
BSY15_2871  beta-eliminating lyase family protein [KO:K00600] [EC:2.1.2.1]
BSY15_3143  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
BSY15_3145  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
BSY15_3326  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSY15_3635  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSY15_3678  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein [KO:K00382] [EC:1.8.1.4]
BSY15_3144  gcvH; glycine cleavage system H protein [KO:K02437]
BSY15_2536  ketopantoate reductase PanE/ApbA family protein [KO:K00042] [EC:1.1.1.60]
BSY15_554  hypothetical protein [KO:K11529] [EC:2.7.1.165]
BSY15_3085  hypothetical protein [KO:K11529] [EC:2.7.1.165]
BSY15_4034  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K03779] [EC:4.2.1.32]
BSY15_4033  ttdB; L(+)-tartrate dehydratase subunit beta [KO:K03780] [EC:4.2.1.32]
BSY15_326  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BSY15_3086  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BSY15_4111  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BSY15_785  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BSY15_2419  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
BSY15_2425  molybdopterin oxidoreductase family protein [KO:K00123] [EC:1.17.1.9]
BSY15_2418  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region family protein [KO:K22515] [EC:1.17.1.9]
BSY15_2426  4Fe-4S dicluster domain protein [KO:K00124]
BSY15_2428  formate dehydrogenase, gamma subunit [KO:K00127]
BSY15_2537  alpha/beta hydrolase fold family protein [KO:K01432] [EC:3.5.1.9]
BSY15_476  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
BSY15_1843  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BSY15_3175  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
acra00010  Glycolysis / Gluconeogenesis
acra00020  Citrate cycle (TCA cycle)
acra00030  Pentose phosphate pathway
acra00053  Ascorbate and aldarate metabolism
acra00071  Fatty acid degradation
acra00230  Purine metabolism
acra00250  Alanine, aspartate and glutamate metabolism
acra00260  Glycine, serine and threonine metabolism
acra00620  Pyruvate metabolism
acra00710  Carbon fixation by Calvin cycle
acra00750  Vitamin B6 metabolism
acra00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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