KEGG   PATHWAY: actt00020
Entry
actt00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Actinobaculum sp. 313
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
actt00020  Citrate cycle (TCA cycle)
actt00020

Module
actt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:actt00020]
actt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:actt00020]
Other DBs
GO: 0006099
Organism
Actinobaculum sp. 313 [GN:actt]
Gene
DDD63_03225  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DDD63_06760  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DDD63_04400  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DDD63_07005  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DDD63_04340  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DDD63_03890  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DDD63_03895  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DDD63_03885  succinate dehydrogenase [KO:K00241]
DDD63_08890  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DDD63_04425  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DDD63_10355  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
DDD63_07125  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DDD63_07010  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
DDD63_05660  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
DDD63_05665  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
DDD63_05655  2-oxoacid:acceptor oxidoreductase [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
actt00010  Glycolysis / Gluconeogenesis
actt00053  Ascorbate and aldarate metabolism
actt00061  Fatty acid biosynthesis
actt00190  Oxidative phosphorylation
actt00220  Arginine biosynthesis
actt00250  Alanine, aspartate and glutamate metabolism
actt00280  Valine, leucine and isoleucine degradation
actt00350  Tyrosine metabolism
actt00470  D-Amino acid metabolism
actt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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