KEGG   PATHWAY: agr03030
Entry
agr03030                    Pathway                                
Name
DNA replication - Agrobacterium tumefaciens H13-3
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
agr03030  DNA replication
agr03030

Organism
Agrobacterium tumefaciens H13-3 [GN:agr]
Gene
AGROH133_10453  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AGROH133_02806  dnaQ; DNA polymerase III epsilon chain [KO:K02342] [EC:2.7.7.7]
AGROH133_07381  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
AGROH133_05713  dnaE; DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
AGROH133_02946  dnaX; DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
AGROH133_06114  holB; DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
AGROH133_09161  holA; putative DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
AGROH133_05246  holC; putative DNA polymerase III chi subunit [KO:K02339] [EC:2.7.7.7]
AGROH133_03437  dnaN; DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
AGROH133_05178  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
AGROH133_07596  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
AGROH133_06149  ssb; Single-stranded DNA-binding protein [KO:K03111]
AGROH133_06092  rnhA; ribonuclease H [KO:K03469] [EC:3.1.26.4]
AGROH133_04439  rnhA; ribonuclease H [KO:K03469] [EC:3.1.26.4]
AGROH133_04318  rnhB; Ribonuclease HII [KO:K03470] [EC:3.1.26.4]
AGROH133_02965  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
AGROH133_07396  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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