KEGG   PATHWAY: ahn00630
Entry
ahn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Atlantibacter hermannii
Class
Metabolism; Carbohydrate metabolism
Pathway map
ahn00630  Glyoxylate and dicarboxylate metabolism
ahn00630

Module
ahn_M00012  Glyoxylate cycle [PATH:ahn00630]
ahn_M00621  Glycine cleavage system [PATH:ahn00630]
Other DBs
GO: 0046487 0043648
Organism
Atlantibacter hermannii [GN:ahn]
Gene
NCTC12129_04634  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
NCTC12129_04561  acs_1; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
NCTC12129_04562  acs_2; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
NCTC12129_04635  aceB; malate synthase [KO:K01638] [EC:2.3.3.9]
NCTC12129_00544  mdh_1; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC12129_03494  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
NCTC12129_02904  acnA_3; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
NCTC12129_00910  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCTC12129_04039  yqeF; putative acyltransferase [KO:K00626] [EC:2.3.1.9]
NCTC12129_01588  atoB_2; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NCTC12129_01554  katA; catalase [KO:K03781] [EC:1.11.1.6]
NCTC12129_02281  katE; catalase HPII [KO:K03781] [EC:1.11.1.6]
NCTC12129_03197  ycdW; dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
NCTC12129_00134  tkrA; 2-ketoaldonate reductase/glyoxylate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
NCTC12129_00398  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
NCTC12129_04960  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NCTC12129_01286  glyA_2; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NCTC12129_04094  gcvP_2; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
NCTC12129_04096  gcvT_1; aminomethyltransferase (glycine cleavage system protein) [KO:K00605] [EC:2.1.2.10]
NCTC12129_00906  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC12129_04095  gcvH; glycine cleavage system H protein [KO:K02437]
NCTC12129_04311  garR_1; tartronate semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
NCTC12129_04310  glxK_2; glycerate kinase [KO:K00865] [EC:2.7.1.165]
NCTC12129_03975  glxK_1; glycerate kinase [KO:K00865] [EC:2.7.1.165]
NCTC12129_01993  eda; KHG/KDPG aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase; 2 dehydro-3-deoxy-phosphogluconate aldolase] [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NCTC12129_00069  fdoH; formate dehydrogenase-O [KO:K00124]
NCTC12129_00068  fdoI; formate dehydrogenase, cytochrome b556(fdo) subunit [KO:K00127]
NCTC12129_02961  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ahn00010  Glycolysis / Gluconeogenesis
ahn00020  Citrate cycle (TCA cycle)
ahn00030  Pentose phosphate pathway
ahn00053  Ascorbate and aldarate metabolism
ahn00071  Fatty acid degradation
ahn00230  Purine metabolism
ahn00250  Alanine, aspartate and glutamate metabolism
ahn00260  Glycine, serine and threonine metabolism
ahn00620  Pyruvate metabolism
ahn00710  Carbon fixation by Calvin cycle
ahn00750  Vitamin B6 metabolism
ahn00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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