KEGG   PATHWAY: amar00020
Entry
amar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Malaciobacter marinus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amar00020  Citrate cycle (TCA cycle)
amar00020

Module
amar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amar00020]
amar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amar00020]
amar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amar00020]
Other DBs
GO: 0006099
Organism
Malaciobacter marinus [GN:amar]
Gene
AMRN_2371  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AMRN_1092  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AMRN_1617  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
AMRN_1747  lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMRN_1830  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AMRN_1831  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AMRN_1832  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
AMRN_1829  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
AMRN_2398  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AMRN_2397  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
AMRN_2571  frdA2; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
AMRN_2381  frdA1; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
AMRN_2570  frdB2; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
AMRN_2382  frdB1; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
AMRN_2572  frdC2; fumarate reductase, cytochrome b subunit [KO:K25996]
AMRN_2380  frdC1; fumarate reductase, cytochrome b subunit [KO:K25996]
AMRN_2614  fumA2; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
AMRN_1286  fumA1; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
AMRN_1284  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AMRN_1752  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
AMRN_0651  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
AMRN_1058  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
AMRN_1364  oadA; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
AMRN_1362  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AMRN_1749  aceE; pyruvate dehydrogenase multienzyme complex, E1 component pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AMRN_1748  aceF; pyruvate dehydrogenase multienzyme complex, E2 component dihydrolipoyl transacetylase [KO:K00627] [EC:2.3.1.12]
AMRN_0211  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amar00010  Glycolysis / Gluconeogenesis
amar00053  Ascorbate and aldarate metabolism
amar00061  Fatty acid biosynthesis
amar00071  Fatty acid degradation
amar00190  Oxidative phosphorylation
amar00220  Arginine biosynthesis
amar00250  Alanine, aspartate and glutamate metabolism
amar00280  Valine, leucine and isoleucine degradation
amar00350  Tyrosine metabolism
amar00470  D-Amino acid metabolism
amar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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