KEGG   PATHWAY: amob00020
Entry
amob00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Adhaeretor mobilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amob00020  Citrate cycle (TCA cycle)
amob00020

Module
amob_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amob00020]
amob_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amob00020]
amob_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amob00020]
amob_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amob00020]
Other DBs
GO: 0006099
Organism
Adhaeretor mobilis [GN:amob]
Gene
HG15A2_05040  gltA_1; Citrate synthase [KO:K01647] [EC:2.3.3.1]
HG15A2_07610  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
HG15A2_36210  acn; Aconitate hydratase precursor [KO:K01681] [EC:4.2.1.3]
HG15A2_17090  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
HG15A2_30540  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
HG15A2_47320  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HG15A2_05940  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HG15A2_05930  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HG15A2_23080  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
HG15A2_23070  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
HG15A2_03840  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HG15A2_02360  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HG15A2_03850  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
HG15A2_02410  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
HG15A2_33980  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HG15A2_04810  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
HG15A2_08700  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
HG15A2_47340  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
HG15A2_47360  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amob00010  Glycolysis / Gluconeogenesis
amob00053  Ascorbate and aldarate metabolism
amob00061  Fatty acid biosynthesis
amob00071  Fatty acid degradation
amob00190  Oxidative phosphorylation
amob00220  Arginine biosynthesis
amob00250  Alanine, aspartate and glutamate metabolism
amob00280  Valine, leucine and isoleucine degradation
amob00350  Tyrosine metabolism
amob00470  D-Amino acid metabolism
amob00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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