KEGG   PATHWAY: amus00020
Entry
amus00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Akanthomyces muscarius
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amus00020  Citrate cycle (TCA cycle)
amus00020

Module
amus_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amus00020]
amus_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amus00020]
amus_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amus00020]
amus_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amus00020]
amus_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amus00020]
Other DBs
GO: 0006099
Organism
Akanthomyces muscarius [GN:amus]
Gene
LMH87_009611  hypothetical protein [KO:K01647] [EC:2.3.3.1]
LMH87_002547  hypothetical protein [KO:K01647] [EC:2.3.3.1]
LMH87_000440  hypothetical protein [KO:K01648] [EC:2.3.3.8]
LMH87_000442  hypothetical protein [KO:K01648] [EC:2.3.3.8]
LMH87_005770  hypothetical protein [KO:K01681] [EC:4.2.1.3]
LMH87_000220  hypothetical protein [KO:K00031] [EC:1.1.1.42]
LMH87_006431  hypothetical protein [KO:K00030] [EC:1.1.1.41]
LMH87_010277  hypothetical protein [KO:K00030] [EC:1.1.1.41]
LMH87_009766  hypothetical protein [KO:K00164] [EC:1.2.4.2]
LMH87_005786  hypothetical protein [KO:K00658] [EC:2.3.1.61]
LMH87_005806  hypothetical protein [KO:K00382] [EC:1.8.1.4]
LMH87_007362  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
LMH87_008141  uncharacterized protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
LMH87_008134  uncharacterized protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
LMH87_009351  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
LMH87_003866  hypothetical protein [KO:K00234] [EC:1.3.5.1]
LMH87_012211  hypothetical protein [KO:K00235] [EC:1.3.5.1]
LMH87_007938  uncharacterized protein [KO:K00236]
LMH87_006507  hypothetical protein [KO:K00237]
LMH87_002110  hypothetical protein [KO:K01679] [EC:4.2.1.2]
LMH87_008220  uncharacterized protein [KO:K00026] [EC:1.1.1.37]
LMH87_011191  hypothetical protein [KO:K00026] [EC:1.1.1.37]
LMH87_002403  hypothetical protein [KO:K01958] [EC:6.4.1.1]
LMH87_003693  hypothetical protein [KO:K01958] [EC:6.4.1.1]
LMH87_011405  hypothetical protein [KO:K01610] [EC:4.1.1.49]
LMH87_011718  hypothetical protein [KO:K00161] [EC:1.2.4.1]
LMH87_001662  hypothetical protein [KO:K00162] [EC:1.2.4.1]
LMH87_008038  uncharacterized protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amus00010  Glycolysis / Gluconeogenesis
amus00053  Ascorbate and aldarate metabolism
amus00061  Fatty acid biosynthesis
amus00062  Fatty acid elongation
amus00071  Fatty acid degradation
amus00190  Oxidative phosphorylation
amus00220  Arginine biosynthesis
amus00250  Alanine, aspartate and glutamate metabolism
amus00280  Valine, leucine and isoleucine degradation
amus00350  Tyrosine metabolism
amus00470  D-Amino acid metabolism
amus00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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