KEGG   PATHWAY: ant00020
Entry
ant00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arcobacter nitrofigilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ant00020  Citrate cycle (TCA cycle)
ant00020

Module
ant_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ant00020]
ant_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ant00020]
ant_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ant00020]
Other DBs
GO: 0006099
Organism
Arcobacter nitrofigilis [GN:ant]
Gene
Arnit_2657  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Arnit_1972  aconitate hydratase domain protein [KO:K01681] [EC:4.2.1.3]
Arnit_1350  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Arnit_1921  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Arnit_2606  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Arnit_2140  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Arnit_2141  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Arnit_2142  Pyruvate/ketoisovalerate oxidoreductase [KO:K00177] [EC:1.2.7.3]
Arnit_2139  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Arnit_2687  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Arnit_2686  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Arnit_0447  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Arnit_2667  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Arnit_2668  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Arnit_0446  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Arnit_0448  Fumarate reductase respiratory complex [KO:K25996]
Arnit_2666  Fumarate reductase respiratory complex [KO:K25996]
Arnit_0445  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Arnit_0674  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Arnit_2994  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Arnit_1922  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Arnit_0766  Malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
Arnit_2779  Carbamoyl-phosphate synthase L chain ATP-binding protein [KO:K01959] [EC:6.4.1.1]
Arnit_1713  Pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
Arnit_1711  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Arnit_2604  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Arnit_2605  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Arnit_0285  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Arnit_0284  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Arnit_0286  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ant00010  Glycolysis / Gluconeogenesis
ant00053  Ascorbate and aldarate metabolism
ant00061  Fatty acid biosynthesis
ant00071  Fatty acid degradation
ant00190  Oxidative phosphorylation
ant00220  Arginine biosynthesis
ant00250  Alanine, aspartate and glutamate metabolism
ant00280  Valine, leucine and isoleucine degradation
ant00350  Tyrosine metabolism
ant00470  D-Amino acid metabolism
ant00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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