KEGG   PATHWAY: aor00020
Entry
aor00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aspergillus oryzae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aor00020  Citrate cycle (TCA cycle)
aor00020

Module
aor_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aor00020]
aor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aor00020]
aor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aor00020]
Other DBs
GO: 0006099
Organism
Aspergillus oryzae [GN:aor]
Gene
AO090010000170  unnamed protein product; citrate synthase [KO:K01647] [EC:2.3.3.1]
AO090102000627  unnamed protein product; citrate synthase [KO:K01647] [EC:2.3.3.1]
AO090009000568  unnamed protein product; citrate synthase [KO:K01647] [EC:2.3.3.1]
AO090023000205  unnamed protein product; ATP-citrate lyase [KO:K01648] [EC:2.3.3.8]
AO090023000206  unnamed protein product; ATP-citrate lyase [KO:K01648] [EC:2.3.3.8]
AO090003000415  unnamed protein product; aconitase/homoaconitase (aconitase superfamily) [KO:K01681] [EC:4.2.1.3]
AO090005000045  unnamed protein product; aconitase/homoaconitase (aconitase superfamily) [KO:K01681] [EC:4.2.1.3]
AO090001000642  unnamed protein product; aconitase/homoaconitase (aconitase superfamily) [KO:K01681] [EC:4.2.1.3]
AO090005001404  unnamed protein product; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AO090012000629  unnamed protein product; isocitrate dehydrogenase, alpha subunit [KO:K00030] [EC:1.1.1.41]
AO090003000008  unnamed protein product; isocitrate dehydrogenase, gamma subunit [KO:K00030] [EC:1.1.1.41]
AO090003001055  unnamed protein product; 2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
AO090020000008  unnamed protein product; dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [KO:K00658] [EC:2.3.1.61]
AO090005001174  unnamed protein product; dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [KO:K00658] [EC:2.3.1.61]
AO090011000486  unnamed protein product; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AO090009000644  unnamed protein product; succinyl-CoA synthetase, alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
AO090038000330  unnamed protein product; succinyl-CoA synthetase, alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
AO090023000354  unnamed protein product; succinyl-CoA synthetase, beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
AO090206000040  unnamed protein product; succinyl-CoA synthetase, beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
AO090020000415  unnamed protein product; succinate dehydrogenase, flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
AO090010000505  unnamed protein product; succinate dehydrogenase, Fe-S protein subunit [KO:K00235] [EC:1.3.5.1]
AO090020000596  unnamed protein product; succinate dehydrogenase, cytochrome b subunit [KO:K00236]
AO090120000133  unnamed protein product; fumarase [KO:K01679] [EC:4.2.1.2]
AO090005000438  unnamed protein product; NAD-dependent malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
AO090701000013  unnamed protein product; NAD-dependent malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
AO090023000801  unnamed protein product; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AO090003000174  unnamed protein product; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AO090012000948  unnamed protein product; pyruvate dehydrogenase E1, alpha subunit [KO:K00161] [EC:1.2.4.1]
AO090003000290  unnamed protein product; pyruvate dehydrogenase E1, alpha subunit [KO:K00161] [EC:1.2.4.1]
AO090124000079  unnamed protein product; pyruvate dehydrogenase E1, beta subunit [KO:K00162] [EC:1.2.4.1]
AO090005000436  unnamed protein product; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aor00010  Glycolysis / Gluconeogenesis
aor00053  Ascorbate and aldarate metabolism
aor00061  Fatty acid biosynthesis
aor00062  Fatty acid elongation
aor00071  Fatty acid degradation
aor00190  Oxidative phosphorylation
aor00220  Arginine biosynthesis
aor00250  Alanine, aspartate and glutamate metabolism
aor00280  Valine, leucine and isoleucine degradation
aor00350  Tyrosine metabolism
aor00470  D-Amino acid metabolism
aor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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