KEGG   PATHWAY: apai00020
Entry
apai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Malaciobacter pacificus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
apai00020  Citrate cycle (TCA cycle)
apai00020

Module
apai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:apai00020]
apai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:apai00020]
apai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:apai00020]
Other DBs
GO: 0006099
Organism
Malaciobacter pacificus [GN:apai]
Gene
APAC_2183  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
APAC_1230  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
APAC_1015  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
APAC_1279  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
APAC_2294  lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
APAC_1694  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
APAC_1695  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
APAC_1696  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
APAC_1693  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
APAC_2193  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
APAC_2194  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
APAC_2192  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
APAC_2034  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
APAC_1632  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
APAC_0546  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
APAC_0396  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
APAC_1407  oadA; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
APAC_1405  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
APAC_2296  aceE; pyruvate dehydrogenase multienzyme complex, E1 component pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
APAC_2295  aceF; pyruvate dehydrogenase multienzyme complex, E2 component dihydrolipoyl transacetylase [KO:K00627] [EC:2.3.1.12]
APAC_0173  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
APAC_0172  porB; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
APAC_0175  porG; pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
APAC_0174  porD; pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
apai00010  Glycolysis / Gluconeogenesis
apai00061  Fatty acid biosynthesis
apai00190  Oxidative phosphorylation
apai00220  Arginine biosynthesis
apai00250  Alanine, aspartate and glutamate metabolism
apai00280  Valine, leucine and isoleucine degradation
apai00350  Tyrosine metabolism
apai00470  D-Amino acid metabolism
apai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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