KEGG   PATHWAY: apla03082
Entry
apla03082                   Pathway                                
Name
ATP-dependent chromatin remodeling - Anas platyrhynchos (mallard)
Class
Genetic Information Processing; Chromosome
Pathway map
apla03082  ATP-dependent chromatin remodeling
apla03082

Organism
Anas platyrhynchos (mallard) [GN:apla]
Gene
101793520  SMARCA5; LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [KO:K11654] [EC:5.6.2.-]
101804991  BAZ1A; LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 1A [KO:K11655]
101804145  BAZ1B; tyrosine-protein kinase BAZ1B [KO:K11658]
119714611  BAZ2A; LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 2A [KO:K15224]
101789983  BAZ2B; bromodomain adjacent to zinc finger domain protein 2B isoform X2 [KO:K26167]
101795150  CHRAC1; chromatin accessibility complex protein 1 [KO:K11656]
101797381  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
101794212  RSF1; LOW QUALITY PROTEIN: remodeling and spacing factor 1 [KO:K11657]
101800953  SMARCA1; probable global transcription activator SNF2L1 isoform X3 [KO:K11727] [EC:5.6.2.-]
101797589  BPTF; nucleosome-remodeling factor subunit BPTF isoform X1 [KO:K11728]
119713671  RBBP4; histone-binding protein RBBP4 isoform X1 [KO:K10752]
101789827  RBBP7; histone-binding protein RBBP7 isoform X2 [KO:K11659]
101794614  LOW QUALITY PROTEIN: cat eye syndrome critical region protein 2 [KO:K25830]
101793648  CHD4; chromodomain-helicase-DNA-binding protein 4 isoform X1 [KO:K11643] [EC:5.6.2.-]
101793506  HDAC2; histone deacetylase 2 [KO:K06067] [EC:3.5.1.98]
119713656  HDAC1; histone deacetylase 1 [KO:K06067] [EC:3.5.1.98]
101790971  MBD2; methyl-CpG-binding domain protein 2 [KO:K11590]
101799697  MBD3; methyl-CpG-binding domain protein 3 isoform X1 [KO:K11591]
101802199  MTA1; metastasis-associated protein MTA1 isoform X1 [KO:K11660]
101795764  MTA3; metastasis-associated protein MTA3 isoform X1 [KO:K11660]
119715093  MTA2; metastasis-associated protein MTA2 [KO:K11660]
101791311  GATAD2A; transcriptional repressor p66-alpha isoform X1 [KO:K23194]
119713806  GATAD2B; transcriptional repressor p66-beta [KO:K23194]
101794320  PHF6; PHD finger protein 6 isoform X1 [KO:K23310]
101801769  CDK2AP1; cyclin-dependent kinase 2-associated protein 1 isoform X2 [KO:K26454]
101790842  SMARCA2; probable global transcription activator SNF2L2 isoform X1 [KO:K11647] [EC:5.6.2.-]
101795853  SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [KO:K11648]
101798694  SMARCC1; LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1 [KO:K11649]
119714627  SMARCC2; SWI/SNF complex subunit SMARCC2 isoform X1 [KO:K11649]
101791227  SMARCD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1 [KO:K11650]
101792542  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X4 [KO:K11650]
113839951  SMARCD2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 [KO:K11650]
119713055  SMARCD3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 [KO:K11650]
101790183  SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1 [KO:K11651]
101800437  ACTB; actin, cytoplasmic 1 [KO:K05692]
119713181  ACTG1; LOW QUALITY PROTEIN: actin, cytoplasmic 2 [KO:K05692]
101792739  actin, cytoplasmic type 5 [KO:K05692]
101799691  ACTL6A; actin-like protein 6A [KO:K11340]
101803760  BCL7B; B-cell CLL/lymphoma 7 protein family member B isoform X1 [KO:K25605]
101803657  BCL7A; B-cell CLL/lymphoma 7 protein family member A isoform X1 [KO:K25605]
101796854  SS18; protein SSXT isoform X1 [KO:K15623]
101789756  SS18L1; calcium-responsive transactivator isoform X1 [KO:K15623]
101800167  ARID1A; AT-rich interactive domain-containing protein 1A isoform X1 [KO:K11653]
101792634  ARID1B; LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1B [KO:K11653]
101802489  DPF3; LOW QUALITY PROTEIN: zinc finger protein DPF3 [KO:K22198]
101791630  ARID2; AT-rich interactive domain-containing protein 2 [KO:K11765]
101797921  PBRM1; protein polybromo-1 isoform X8 [KO:K11757]
101793901  BRD7; bromodomain-containing protein 7 [KO:K11723]
101798257  PHF10; PHD finger protein 10 isoform X1 [KO:K22197]
101791660  BRD9; bromodomain-containing protein 9 isoform X1 [KO:K22184]
101797157  BICRAL; BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X1 [KO:K25613]
101792013  INO80; chromatin-remodeling ATPase INO80 [KO:K11665] [EC:5.6.2.-]
119716909  INO80B; INO80 complex subunit B [KO:K11666]
101791066  INO80C; INO80 complex subunit C isoform X1 [KO:K11667]
101804811  INO80D; INO80 complex subunit D [KO:K11668]
101797167  NFRKB; nuclear factor related to kappa-B-binding protein isoform X1 [KO:K11671]
119714714  MCRS1; LOW QUALITY PROTEIN: microspherule protein 1 [KO:K11674]
101804004  UCHL5; ubiquitin carboxyl-terminal hydrolase isozyme L5 [KO:K05610] [EC:3.4.19.12]
101789515  RUVBL1; ruvB-like 1 [KO:K04499] [EC:5.6.2.4]
101791086  ACTR5; actin-related protein 5 [KO:K11672]
101790990  ACTR8; actin-related protein 8 isoform X1 [KO:K11673]
101803236  YY1; transcriptional repressor protein YY1 [KO:K09201]
101797501  DMAP1; DNA methyltransferase 1-associated protein 1 [KO:K11324]
101789622  YEATS4; YEATS domain-containing protein 4 [KO:K11341]
113839895  VPS72; LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 72 homolog [KO:K11664]
101790248  histone H2A.Z [KO:K11251]
101797202  core histone macro-H2A.2 [KO:K11251]
101795967  core histone macro-H2A.1 isoform X1 [KO:K11251]
101798364  histone H2A isoform X2 [KO:K11251]
101793815  histone H2A [KO:K11251]
101794722  histone H2A-IV [KO:K11251]
101794184  histone H2A-IV [KO:K11251]
101795121  histone H2A type 2-C [KO:K11251]
101796281  histone H2A.J [KO:K11251]
101798172  histone H2A-IV [KO:K11251]
110351440  histone H2A-IV [KO:K11251]
113839842  histone H2A [KO:K11251]
113842443  late histone H2A.2.2-like [KO:K11251]
113843060  histone H2A [KO:K11251]
113843058  histone H2A-IV [KO:K11251]
119713460  histone H2A.V [KO:K11251]
113840716  ACTR6; actin-related protein 6 [KO:K11662]
101798137  EP400; LOW QUALITY PROTEIN: E1A-binding protein p400 [KO:K11320] [EC:5.6.2.-]
101789536  LOW QUALITY PROTEIN: transformation/transcription domain-associated protein [KO:K08874]
101803020  MORF4L1; mortality factor 4-like protein 1 isoform X1 [KO:K11339]
101800845  MRG/MORF4L-binding protein [KO:K11343]
101794723  ING3; inhibitor of growth protein 3 isoform X1 [KO:K11319]
101791951  EPC1; enhancer of polycomb homolog 1 isoform X5 [KO:K11322]
101804399  EPC2; enhancer of polycomb homolog 2 isoform X1 [KO:K11322]
101791185  MEAF6; chromatin modification-related protein MEAF6 isoform X1 [KO:K11344]
Reference
PMID:31769422
  Authors
Hasan N, Ahuja N
  Title
The Emerging Roles of ATP-Dependent Chromatin Remodeling Complexes in Pancreatic Cancer.
  Journal
Cancers (Basel) 11:cancers11121859 (2019)
DOI:10.3390/cancers11121859
Reference
PMID:32001526
  Authors
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
  Title
Structure of nucleosome-bound human BAF complex.
  Journal
Science 367:875-881 (2020)
DOI:10.1126/science.aaz9761
Reference
PMID:33941852
  Authors
Wanior M, Kramer A, Knapp S, Joerger AC
  Title
Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy.
  Journal
Oncogene 40:3637-3654 (2021)
DOI:10.1038/s41388-021-01781-x
Reference
PMID:20493981
  Authors
Burgio G, Onorati MC, Corona DF
  Title
Chromatin remodeling regulation by small molecules and metabolites.
  Journal
Biochim Biophys Acta 1799:671-80 (2010)
DOI:10.1016/j.bbagrm.2010.05.007
KO pathway
ko03082   
LinkDB

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