KEGG   PATHWAY: arab00020
Entry
arab00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Ascochyta rabiei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
arab00020  Citrate cycle (TCA cycle)
arab00020

Module
arab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:arab00020]
arab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:arab00020]
arab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:arab00020]
arab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:arab00020]
arab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:arab00020]
Other DBs
GO: 0006099
Organism
Ascochyta rabiei [GN:arab]
Gene
EKO05_0006347  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EKO05_0008890  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EKO05_0001544  ATP citrate synthase [KO:K01648] [EC:2.3.3.8]
EKO05_0001545  ATP citrate synthase [KO:K01648] [EC:2.3.3.8]
EKO05_0009543  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EKO05_0010299  Isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
EKO05_0008451  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
EKO05_0000815  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
EKO05_0005969  Oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
EKO05_0009739  Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EKO05_0000214  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EKO05_0002820  uncharacterized protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
EKO05_0009121  uncharacterized protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
EKO05_0005024  uncharacterized protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
EKO05_0006509  Succinate dehydrogenase (quinone) [KO:K00234] [EC:1.3.5.1]
EKO05_0002245  Succinate dehydrogenase (quinone) [KO:K00234] [EC:1.3.5.1]
EKO05_0008369  Succinate dehydrogenase (quinone) [KO:K00235] [EC:1.3.5.1]
EKO05_0010004  uncharacterized protein [KO:K00236]
EKO05_0003575  membrane anchor subunit of succinate dehydrogenase, Sdh4 [KO:K00237]
EKO05_0006275  Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EKO05_0003081  Malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
EKO05_0000667  Malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
EKO05_0008206  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
EKO05_0006070  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EKO05_0011442  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
EKO05_0005086  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
EKO05_0000901  Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
arab00010  Glycolysis / Gluconeogenesis
arab00053  Ascorbate and aldarate metabolism
arab00061  Fatty acid biosynthesis
arab00062  Fatty acid elongation
arab00071  Fatty acid degradation
arab00190  Oxidative phosphorylation
arab00220  Arginine biosynthesis
arab00250  Alanine, aspartate and glutamate metabolism
arab00280  Valine, leucine and isoleucine degradation
arab00350  Tyrosine metabolism
arab00470  D-Amino acid metabolism
arab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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