KEGG   PATHWAY: arr00630
Entry
arr00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Arthrobacter sp. Rue61a
Class
Metabolism; Carbohydrate metabolism
Pathway map
arr00630  Glyoxylate and dicarboxylate metabolism
arr00630

Module
arr_M00012  Glyoxylate cycle [PATH:arr00630]
arr_M00621  Glycine cleavage system [PATH:arr00630]
Other DBs
GO: 0046487 0043648
Organism
Arthrobacter sp. Rue61a [GN:arr]
Gene
ARUE_c06840  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
ARUE_c04800  acsm; acyl-coenzyme A synthetase ACSM [KO:K01895] [EC:6.2.1.1]
ARUE_c34910  acsA; acetyl-coenzyme A synthetase AcsA [KO:K01895] [EC:6.2.1.1]
ARUE_c35440  malate synthase A [KO:K01638] [EC:2.3.3.9]
ARUE_c06830  malate synthase A [KO:K01638] [EC:2.3.3.9]
ARUE_c05390  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
ARUE_c29480  gltA2; citrate synthase [KO:K01647] [EC:2.3.3.1]
ARUE_c16940  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
ARUE_c22670  putative acetyl-CoA C-acetyltransferase / thiolase [KO:K00626] [EC:2.3.1.9]
ARUE_c31070  putative acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ARUE_c04390  hypothetical protein [KO:K00626] [EC:2.3.1.9]
ARUE_c22960  fadI; 3-ketoacyl-CoA thiolase FadI [KO:K00626] [EC:2.3.1.9]
ARUE_c12140  fadA; 3-ketoacyl-CoA thiolase FadA [KO:K00626] [EC:2.3.1.9]
ARUE_c00510  bccA1; acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
ARUE_c13260  bccA2; acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
ARUE_c13340  pccB; propionyl-CoA carboxylase beta chain [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
ARUE_c08750  FAD/FMN-containing dehydrogenase [KO:K00104] [EC:1.1.99.14]
ARUE_c32080  katA; catalase KatA [KO:K03781] [EC:1.11.1.6]
ARUE_c19980  katE; catalase HPII [KO:K03781] [EC:1.11.1.6]
ARUE_c20790  gyaR; glyoxylate reductase GyaR [KO:K00015] [EC:1.1.1.26]
ARUE_c42790  putative glyoxylate reductase [KO:K00015] [EC:1.1.1.26]
ARUE_c22380  hypothetical protein [KO:K01091] [EC:3.1.3.18]
ARUE_c08380  haloacid dehalogenase-like hydrolase [KO:K01091] [EC:3.1.3.18]
ARUE_c36440  putative serine-pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
ARUE_c16420  glnA1; putative glutamine synthetase 2 [KO:K01915] [EC:6.3.1.2]
ARUE_c16480  glnA2; glutamine synthetase 1 [KO:K01915] [EC:6.3.1.2]
ARUE_c11630  glyA1; serine hydroxymethyltransferase GlyA [KO:K00600] [EC:2.1.2.1]
ARUE_c41440  glyA3; serine hydroxymethyltransferase GlyA [KO:K00600] [EC:2.1.2.1]
ARUE_c39610  glyA2; serine hydroxymethyltransferase GlyA [KO:K00600] [EC:2.1.2.1]
ARUE_c09380  gcvP1; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
ARUE_c41470  gcvP2; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
ARUE_c09390  gcvT1; aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
ARUE_c41460  gcvT2; aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
ARUE_c16600  bfmBC; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ARUE_c09400  gcvH1; glycine cleavage system H protein GcvH [KO:K02437]
ARUE_c15900  gcvH2; glycine cleavage system H protein GcvH [KO:K02437]
ARUE_c41450  gcvH3; glycine cleavage system H protein [KO:K02437]
ARUE_c36340  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
ARUE_c17710  xylose isomerase domain protein TIM barrel [KO:K01816] [EC:5.3.1.22]
ARUE_c36320  putative hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
ARUE_c25780  putative beta-hydroxyacid dehydrogenase [KO:K00042] [EC:1.1.1.60]
ARUE_c36330  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
ARUE_c00670  garK; glycerate kinase 2 [KO:K00865] [EC:2.7.1.165]
ARUE_c36350  glxK; glycerate kinase GlxK [KO:K00865] [EC:2.7.1.165]
ARUE_c42800  glycerate kinase family protein [KO:K00865] [EC:2.7.1.165]
ARUE_c21200  ycsA; putative tartrate dehydrogenase/decarboxylase YcsA [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
ARUE_c42030  putative 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ARUE_c19750  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ARUE_c27920  kgd; 2-oxoglutarate decarboxylase Kgd [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
ARUE_113p00090  meqF; N-acetylanthranilate amidase MeqF [KO:K01432] [EC:3.5.1.9]
ARUE_c39670  purU3; formyltetrahydrofolate deformylase PurU [KO:K01433] [EC:3.5.1.10]
ARUE_c04540  purU1; formyltetrahydrofolate deformylase PurU [KO:K01433] [EC:3.5.1.10]
ARUE_c11620  purU2; formyltetrahydrofolate deformylase PurU [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
arr00010  Glycolysis / Gluconeogenesis
arr00020  Citrate cycle (TCA cycle)
arr00030  Pentose phosphate pathway
arr00053  Ascorbate and aldarate metabolism
arr00071  Fatty acid degradation
arr00230  Purine metabolism
arr00250  Alanine, aspartate and glutamate metabolism
arr00260  Glycine, serine and threonine metabolism
arr00620  Pyruvate metabolism
arr00710  Carbon fixation by Calvin cycle
arr00750  Vitamin B6 metabolism
arr00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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