KEGG   PATHWAY: arx00030
Entry
arx00030                    Pathway                                
Name
Pentose phosphate pathway - Arthrobacter sp. ZXY-2
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
arx00030  Pentose phosphate pathway
arx00030

Module
arx_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:arx00030]
arx_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:arx00030]
arx_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:arx00030]
arx_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:arx00030]
arx_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:arx00030]
arx_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:arx00030]
Other DBs
GO: 0006098
Organism
Arthrobacter sp. ZXY-2 [GN:arx]
Gene
ARZXY2_1883  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
ARZXY2_159  pgi1; glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
ARZXY2_1884  zwf; glucose 6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
ARZXY2_1453  zwf; glucose 6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
ARZXY2_1886  devB; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
ARZXY2_1549  gnd; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
ARZXY2_3896  gnd; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
ARZXY2_2166  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
ARZXY2_176  tktB; transketolase [KO:K00615] [EC:2.2.1.1]
ARZXY2_177  tktB; transketolase [KO:K00615] [EC:2.2.1.1]
ARZXY2_1881  tktB; transketolase [KO:K00615] [EC:2.2.1.1]
ARZXY2_3966  tktB; transketolase [KO:K00615] [EC:2.2.1.1]
ARZXY2_3967  tktB; transketolase [KO:K00615] [EC:2.2.1.1]
ARZXY2_1882  talB; transaldolase [KO:K00616] [EC:2.2.1.2]
ARZXY2_1580  rpiB; ribose 5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
ARZXY2_2902  rpiB; ribose 5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
ARZXY2_3961  rpiB; ribose 5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
ARZXY2_3983  hxlA; 3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
ARZXY2_3982  hxlB; 3-hexulose-6-phosphate isomerase [KO:K08094] [EC:5.3.1.27]
ARZXY2_1273  xylulose 5-phosphateFructose 6-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
ARZXY2_2042  phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
ARZXY2_2658  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
ARZXY2_103  rbsK; Fructokinase [KO:K00852] [EC:2.7.1.15]
ARZXY2_3818  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
ARZXY2_2679  prsA; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
ARZXY2_165  eda; Putative KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ARZXY2_3992  eda; 2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ARZXY2_4028  hypothetical protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ARZXY2_3382  gluconolactonase [KO:K01053] [EC:3.1.1.17]
ARZXY2_4040  hypothetical protein [KO:K06152] [EC:1.1.99.3]
ARZXY2_965  aroL; carbohydrate kinase [KO:K00851] [EC:2.7.1.12]
ARZXY2_4027  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
ARZXY2_2572  fbaA; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
ARZXY2_3388  fbaA; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
ARZXY2_2715  glpX; fructose 1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
ARZXY2_699  pfkA; 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
ARZXY2_2081  pfkA; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
arx00010  Glycolysis / Gluconeogenesis
arx00040  Pentose and glucuronate interconversions
arx00052  Galactose metabolism
arx00230  Purine metabolism
arx00240  Pyrimidine metabolism
arx00340  Histidine metabolism
arx00630  Glyoxylate and dicarboxylate metabolism
arx00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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