KEGG   PATHWAY: arz00020
Entry
arz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arthrobacter sp. ATCC 21022
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
arz00020  Citrate cycle (TCA cycle)
arz00020

Module
arz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:arz00020]
arz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:arz00020]
arz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:arz00020]
arz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:arz00020]
arz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:arz00020]
Other DBs
GO: 0006099
Organism
Arthrobacter sp. ATCC 21022 [GN:arz]
Gene
AUT26_13790  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AUT26_07855  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AUT26_05290  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AUT26_12975  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AUT26_07695  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AUT26_04595  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AUT26_04590  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AUT26_05460  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AUT26_05455  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AUT26_05470  succinate dehydrogenase [KO:K00241]
AUT26_05465  succinate dehydrogenase [KO:K00242]
AUT26_05715  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AUT26_12455  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AUT26_07405  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AUT26_03600  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AUT26_09725  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AUT26_12015  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AUT26_16225  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AUT26_09470  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AUT26_09480  dehydrogenase [KO:K00627] [EC:2.3.1.12]
AUT26_07690  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
arz00010  Glycolysis / Gluconeogenesis
arz00053  Ascorbate and aldarate metabolism
arz00061  Fatty acid biosynthesis
arz00071  Fatty acid degradation
arz00190  Oxidative phosphorylation
arz00220  Arginine biosynthesis
arz00250  Alanine, aspartate and glutamate metabolism
arz00280  Valine, leucine and isoleucine degradation
arz00350  Tyrosine metabolism
arz00470  D-Amino acid metabolism
arz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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