KEGG   PATHWAY: ash00020
Entry
ash00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alistipes shahii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ash00020  Citrate cycle (TCA cycle)
ash00020

Module
ash_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ash00020]
Other DBs
GO: 0006099
Organism
Alistipes shahii [GN:ash]
Gene
AL1_07060  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AL1_06910  Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AL1_00900  Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AL1_06900  Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AL1_06890  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
AL1_06920  4Fe-4S binding domain. [KO:K00176] [EC:1.2.7.3]
AL1_31820  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
AL1_31830  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
AL1_31810  succinate dehydrogenase subunit C [KO:K00241]
AL1_22040  fumarase [KO:K01676] [EC:4.2.1.2]
AL1_22080  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
AL1_23160  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
AL1_04250  Pyruvate/oxaloacetate carboxyltransferase [KO:K01960] [EC:6.4.1.1]
AL1_10680  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AL1_13430  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ash00010  Glycolysis / Gluconeogenesis
ash00053  Ascorbate and aldarate metabolism
ash00061  Fatty acid biosynthesis
ash00071  Fatty acid degradation
ash00190  Oxidative phosphorylation
ash00220  Arginine biosynthesis
ash00250  Alanine, aspartate and glutamate metabolism
ash00280  Valine, leucine and isoleucine degradation
ash00470  D-Amino acid metabolism
ash00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system