KEGG   PATHWAY: ask00020
Entry
ask00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aliarcobacter skirrowii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ask00020  Citrate cycle (TCA cycle)
ask00020

Module
ask_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ask00020]
ask_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ask00020]
ask_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ask00020]
Other DBs
GO: 0006099
Organism
Aliarcobacter skirrowii [GN:ask]
Gene
EI285_08385  citrate synthase [KO:K01647] [EC:2.3.3.1]
EI285_04790  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EI285_05835  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EI285_03440  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EI285_05790  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EI285_05795  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EI285_05800  oorC; 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
EI285_05785  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
EI285_08335  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
EI285_08330  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
EI285_08340  fumarate reductase cytochrome b subunit [KO:K25996]
EI285_07635  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EI285_01700  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EI285_07775  FAD-dependent oxidoreductase [KO:K00116] [EC:1.1.5.4]
EI285_06460  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
EI285_04845  biotin/lipoyl-binding protein [KO:K01960] [EC:6.4.1.1]
EI285_04840  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EI285_03450  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EI285_03445  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ask00010  Glycolysis / Gluconeogenesis
ask00061  Fatty acid biosynthesis
ask00190  Oxidative phosphorylation
ask00220  Arginine biosynthesis
ask00250  Alanine, aspartate and glutamate metabolism
ask00280  Valine, leucine and isoleucine degradation
ask00350  Tyrosine metabolism
ask00470  D-Amino acid metabolism
ask00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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