KEGG   PATHWAY: asub03440
Entry
asub03440                   Pathway                                
Name
Homologous recombination - Atlantibacter subterranea
Description
Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.
Class
Genetic Information Processing; Replication and repair
Pathway map
asub03440  Homologous recombination
asub03440

Other DBs
GO: 0000724
Organism
Atlantibacter subterranea [GN:asub]
Gene
NLZ15_03775  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
NLZ15_20555  ssb1; single-stranded DNA-binding protein SSB1 [KO:K03111]
NLZ15_00015  recF; DNA replication/repair protein RecF [KO:K03629]
NLZ15_05575  recO; DNA repair protein RecO [KO:K03584]
NLZ15_05680  recR; recombination mediator RecR [KO:K06187]
NLZ15_04415  recA; recombinase RecA [KO:K03553]
NLZ15_22070  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
NLZ15_13015  ruvA; Holliday junction branch migration protein RuvA [KO:K03550]
NLZ15_13010  ruvB; Holliday junction branch migration DNA helicase RuvB [KO:K03551] [EC:5.6.2.4]
NLZ15_13020  ruvC; crossover junction endodeoxyribonuclease RuvC [KO:K01159] [EC:3.1.21.10]
NLZ15_21910  recG; ATP-dependent DNA helicase RecG [KO:K03655] [EC:5.6.2.4]
NLZ15_04070  recB; exodeoxyribonuclease V subunit beta [KO:K03582] [EC:3.1.11.5]
NLZ15_04060  recC; exodeoxyribonuclease V subunit gamma [KO:K03583] [EC:3.1.11.5]
NLZ15_04075  recD; exodeoxyribonuclease V subunit alpha [KO:K03581] [EC:3.1.11.5]
NLZ15_17900  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
NLZ15_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
NLZ15_05670  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
NLZ15_06890  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
NLZ15_08940  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
NLZ15_17750  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
NLZ15_12920  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
NLZ15_02495  holC; DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
NLZ15_19135  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
NLZ15_21555  priA; primosomal protein N' [KO:K04066] [EC:5.6.2.4]
NLZ15_19930  priB; primosomal replication protein N [KO:K02686]
NLZ15_05655  primosomal replication protein [KO:K04067]
NLZ15_19205  dnaT; primosomal protein DnaT [KO:K02317]
Reference
  Authors
Maloisel L, Fabre F, Gangloff S.
  Title
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.
  Journal
Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07
Reference
  Authors
Haruta-Takahashi N, Iwasaki H.
  Title
[Recombination mediators]
  Journal
Seikagaku 79:449-53 (2007)
Reference
  Authors
Ouyang KJ, Woo LL, Ellis NA.
  Title
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.
  Journal
Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003
Reference
  Authors
Kawabata M, Kawabata T, Nishibori M.
  Title
Role of recA/RAD51 family proteins in mammals.
  Journal
Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987
Reference
  Authors
Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.
  Title
Mitotic recombination in Saccharomyces cerevisiae.
  Journal
Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3
Reference
  Authors
Heyer WD, Li X, Rolfsmeier M, Zhang XP.
  Title
Rad54: the Swiss Army knife of homologous recombination?
  Journal
Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481
Reference
  Authors
Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.
  Title
Recombination proteins and rescue of arrested replication forks.
  Journal
DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016
KO pathway
ko03440   
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