KEGG   PATHWAY: atem00630
Entry
atem00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Acidovorax temperans
Class
Metabolism; Carbohydrate metabolism
Pathway map
atem00630  Glyoxylate and dicarboxylate metabolism
atem00630

Module
atem_M00012  Glyoxylate cycle [PATH:atem00630]
atem_M00621  Glycine cleavage system [PATH:atem00630]
Other DBs
GO: 0046487 0043648
Organism
Acidovorax temperans [GN:atem]
Gene
PQV96_06535  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
PQV96_08090  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PQV96_01490  malate synthase G [KO:K01638] [EC:2.3.3.9]
PQV96_12445  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PQV96_12480  citrate synthase [KO:K01647] [EC:2.3.3.1]
PQV96_13660  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PQV96_12430  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PQV96_20920  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
PQV96_03265  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
PQV96_09665  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PQV96_11345  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
PQV96_11875  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
PQV96_17000  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
PQV96_09660  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
PQV96_09060  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01965] [EC:6.4.1.3]
PQV96_09065  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
PQV96_13970  biotin carboxylase N-terminal domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
PQV96_09075  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
PQV96_18495  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
PQV96_19780  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
PQV96_19770  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
PQV96_16115  catalase [KO:K03781] [EC:1.11.1.6]
PQV96_03360  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PQV96_10530  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PQV96_21975  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
PQV96_01650  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PQV96_15965  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
PQV96_22015  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
PQV96_22010  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
PQV96_05315  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
PQV96_05455  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PQV96_11265  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PQV96_11255  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
PQV96_08895  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PQV96_10755  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PQV96_11065  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PQV96_11260  gcvH; glycine cleavage system protein GcvH [KO:K02437]
PQV96_14340  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
PQV96_13850  glycerate kinase [KO:K11529] [EC:2.7.1.165]
PQV96_12820  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PQV96_13860  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PQV96_16870  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PQV96_14095  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
PQV96_14125  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
PQV96_14130  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
PQV96_14090  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
PQV96_14080  formate dehydrogenase subunit gamma [KO:K00127]
PQV96_14335  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
PQV96_13630  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
PQV96_18485  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PQV96_03705  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
PQV96_11970  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
atem00010  Glycolysis / Gluconeogenesis
atem00020  Citrate cycle (TCA cycle)
atem00030  Pentose phosphate pathway
atem00053  Ascorbate and aldarate metabolism
atem00071  Fatty acid degradation
atem00230  Purine metabolism
atem00250  Alanine, aspartate and glutamate metabolism
atem00260  Glycine, serine and threonine metabolism
atem00620  Pyruvate metabolism
atem00710  Carbon fixation by Calvin cycle
atem00750  Vitamin B6 metabolism
atem00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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