KEGG   PATHWAY: ato00020
Entry
ato00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acetobacter tropicalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ato00020  Citrate cycle (TCA cycle)
ato00020

Module
ato_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ato00020]
ato_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ato00020]
ato_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ato00020]
ato_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ato00020]
ato_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ato00020]
Other DBs
GO: 0006099
Organism
Acetobacter tropicalis [GN:ato]
Gene
CIW82_12180  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CIW82_05830  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CIW82_15155  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CIW82_17295  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CIW82_11960  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CIW82_10630  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CIW82_10635  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CIW82_12970  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CIW82_10640  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CIW82_02805  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CIW82_12200  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CIW82_00210  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CIW82_04390  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CIW82_04395  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CIW82_04380  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CIW82_04385  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CIW82_05920  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CIW82_11920  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CIW82_12650  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CIW82_14455  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CIW82_12985  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CIW82_12980  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CIW82_12975  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
CIW82_17465  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
CIW82_01020  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ato00010  Glycolysis / Gluconeogenesis
ato00053  Ascorbate and aldarate metabolism
ato00061  Fatty acid biosynthesis
ato00071  Fatty acid degradation
ato00190  Oxidative phosphorylation
ato00220  Arginine biosynthesis
ato00250  Alanine, aspartate and glutamate metabolism
ato00280  Valine, leucine and isoleucine degradation
ato00350  Tyrosine metabolism
ato00470  D-Amino acid metabolism
ato00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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