KEGG   PATHWAY: atp00020
Entry
atp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aliarcobacter trophiarum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
atp00020  Citrate cycle (TCA cycle)
atp00020

Module
atp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:atp00020]
atp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:atp00020]
atp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:atp00020]
Other DBs
GO: 0006099
Organism
Aliarcobacter trophiarum [GN:atp]
Gene
ATR_0361  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ATR_1246  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ATR_1032  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
ATR_0794  lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ATR_1078  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ATR_1079  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ATR_1080  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
ATR_1077  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
ATR_0351  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
ATR_0350  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
ATR_0352  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
ATR_1701  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
ATR_1033  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
ATR_1481  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
ATR_0674  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
ATR_0223  pyruvate/oxaloacetate carboxyltransferase [KO:K01960] [EC:6.4.1.1]
ATR_0875  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ATR_0796  aceE; pyruvate dehydrogenase multienzyme complex, E1 component pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ATR_0795  aceF; pyruvate dehydrogenase multienzyme complex, E2 component dihydrolipoyl transacetylase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
atp00010  Glycolysis / Gluconeogenesis
atp00053  Ascorbate and aldarate metabolism
atp00061  Fatty acid biosynthesis
atp00190  Oxidative phosphorylation
atp00220  Arginine biosynthesis
atp00250  Alanine, aspartate and glutamate metabolism
atp00280  Valine, leucine and isoleucine degradation
atp00350  Tyrosine metabolism
atp00470  D-Amino acid metabolism
atp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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