KEGG   PATHWAY: avn00630
Entry
avn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Azotobacter vinelandii DJ
Class
Metabolism; Carbohydrate metabolism
Pathway map
avn00630  Glyoxylate and dicarboxylate metabolism
avn00630

Module
avn_M00621  Glycine cleavage system [PATH:avn00630]
Other DBs
GO: 0046487 0043648
Organism
Azotobacter vinelandii DJ [GN:avn]
Gene
Avin_28420  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Avin_34530  acsA1; acetate-CoA ligase [KO:K01895] [EC:6.2.1.1]
Avin_42750  acsA2; Acetate CoA ligase AcsA [KO:K01895] [EC:6.2.1.1]
Avin_43290  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
Avin_05920  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
Avin_29820  gltA; Citrate synthase I [KO:K01647] [EC:2.3.3.1]
Avin_20040  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Avin_23470  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Avin_14260  aat1; beta-ketothiolase [KO:K00626] [EC:2.3.1.9]
Avin_07370  Thiolase [KO:K00626] [EC:2.3.1.9]
Avin_17360  Acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
Avin_22240  Thiolase protein [KO:K00626] [EC:2.3.1.9]
Avin_16380  acetoacetyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
Avin_23640  phbA; polyhydroxybutyrate biosynthetic beta-ketothiolase [KO:K00626] [EC:2.3.1.9]
Avin_23650  phbB; Acetoacetl-CoA reductase in PHB biosynthesis [KO:K00023] [EC:1.1.1.36]
Avin_43330  glcD; glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
Avin_43320  glcE; glycolate oxidase FAD binding subunit, glcE [KO:K11472] [EC:1.1.99.14]
Avin_43310  glcF; Glycolate oxidase iron-sulfur subunit, glcF [KO:K11473] [EC:1.1.99.14]
Avin_47920  Catalase protein [KO:K03781] [EC:1.11.1.6]
Avin_30550  D-isomer specific 2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Avin_41230  D-glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
Avin_14840  HAD-superfamily hydrolase [KO:K01091] [EC:3.1.3.18]
Avin_46650  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Avin_34400  glutamine synthetase catalytic domain family protein [KO:K01915] [EC:6.3.1.2]
Avin_45850  glnA; glutamine synthetase, type I; GlnA [KO:K01915] [EC:6.3.1.2]
Avin_48860  spuB; putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Avin_48880  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Avin_40970  glyA; glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Avin_47260  gcvP1; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Avin_26020  gcvP2; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Avin_26050  gcvT3; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Avin_47280  gcvT; Glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Avin_31840  gcvT2; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Avin_29750  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Avin_47270  gcvH; Glycine cleavage system H protein [KO:K02437]
Avin_43400  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
Avin_43410  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Avin_19810  hydroxypyruvate isomerase protein [KO:K01816] [EC:5.3.1.22]
Avin_31430  Xylose isomerase-like TIM barrel protein, probably inolved in myo-inositol catabolism [KO:K01816] [EC:5.3.1.22]
Avin_43420  garR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Avin_43390  yhaD; Glycerate kinase [KO:K00865] [EC:2.7.1.165]
Avin_09240  aldB; Aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
Avin_31200  ttdA; L-tartrate dehydratase alpha subunit [KO:K03779] [EC:4.2.1.32]
Avin_31190  ttdB; L(+)-tartrate dehydratase beta subunit protein [KO:K03780] [EC:4.2.1.32]
Avin_34340  KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Avin_15720  eda-2; KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Avin_27250  eda-1; KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Avin_03810  fdhA; formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Avin_03820  fdhH; formate dehydrogenase, beta subunit [KO:K00124]
Avin_03830  fdhI; formate dehydrogenase, gamma subunit [KO:K00127]
Avin_38280  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Avin_26150  hutG; N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
avn00010  Glycolysis / Gluconeogenesis
avn00020  Citrate cycle (TCA cycle)
avn00030  Pentose phosphate pathway
avn00053  Ascorbate and aldarate metabolism
avn00071  Fatty acid degradation
avn00230  Purine metabolism
avn00250  Alanine, aspartate and glutamate metabolism
avn00260  Glycine, serine and threonine metabolism
avn00620  Pyruvate metabolism
avn00710  Carbon fixation by Calvin cycle
avn00750  Vitamin B6 metabolism
avn00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system