KEGG   PATHWAY: bbig00020
Entry
bbig00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Babesia bigemina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbig00020  Citrate cycle (TCA cycle)
bbig00020

Module
bbig_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bbig00020]
Other DBs
GO: 0006099
Organism
Babesia bigemina [GN:bbig]
Gene
BBBOND_0103300  citrate synthase, putative [KO:K01647] [EC:2.3.3.1]
BBBOND_0404160  aconitate hydratase 1 family protein, putative [KO:K01681] [EC:4.2.1.3]
BBBOND_0306150  isocitrate dehydrogenase, NADP-dependent family protein, putative [KO:K00031] [EC:1.1.1.42]
BBBOND_0206910  2-oxoglutarate dehydrogenase E1 component, putative [KO:K00164] [EC:1.2.4.2]
BBBOND_0210130  dihydrolipoamide succinyltransferase, putative [KO:K00658] [EC:2.3.1.61]
BBBOND_0401000  dihydrolipoamide dehydrogenase, putative [KO:K00382] [EC:1.8.1.4]
BBBOND_0306870  succinyl-CoA synthetase, alpha subunit family protein, putative [KO:K01899] [EC:6.2.1.4 6.2.1.5]
BBBOND_0108180  succinly CoA-ligase beta subunit, putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
BBBOND_0400960  succinate dehydrogenase alpha subunit, putative [KO:K00234] [EC:1.3.5.1]
BBBOND_0209520  succinate dehydrogenase iron-sulfur subunit, putative [KO:K00235] [EC:1.3.5.1]
BBBOND_0206380  fumarate hydratase, putative [KO:K01676] [EC:4.2.1.2]
BBBOND_0301940  malate:quinone oxidoreductase, putative [KO:K00116] [EC:1.1.5.4]
BBBOND_0207800  phosphoenolpyruvate carboxykinase, putative [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbig00010  Glycolysis / Gluconeogenesis
bbig00061  Fatty acid biosynthesis
bbig00062  Fatty acid elongation
bbig00071  Fatty acid degradation
bbig00190  Oxidative phosphorylation
bbig00220  Arginine biosynthesis
bbig00250  Alanine, aspartate and glutamate metabolism
bbig00280  Valine, leucine and isoleucine degradation
bbig00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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