KEGG   PATHWAY: bbig03013
Entry
bbig03013                   Pathway                                
Name
Nucleocytoplasmic transport - Babesia bigemina
Description
The exchange of molecules between the nucleus and cytoplasm is mediated through nuclear pore complexes (NPCs) embedded in the nuclear envelope. The NPC is composed of highly conserved, distinct structural modules: the inner pore ring, the cytoplasmic and nuclear rings as well as the cytoplasmic filaments and the nuclear basket. Nuclear transport receptors (e.g. importins and exportins) mediate translocation of cargos through the NPC. Cargo proteins harbouring a nuclear export signal (NES) bind to exportins and Ran-GTP to form an export complex in the nucleoplasm. Nuclear export of bulk mRNA is provided by the non-karyopherin transport proteins TAP-p15 in a Ran-GTP-independent manner. Several EJC factors are known to function in mRNA export.
Class
Genetic Information Processing; Translation
Pathway map
bbig03013  Nucleocytoplasmic transport
bbig03013

Other DBs
GO: 0050658
Organism
Babesia bigemina [GN:bbig]
Gene
BBBOND_0403620  DEAD/DEAH box helicase, putative [KO:K18655] [EC:5.6.2.7]
BBBOND_0402690  mRNA export protein, putative [KO:K14298]
BBBOND_0305560  Nucleoporin2, putative [KO:K14297]
BBBOND_0405230  -SUMO-conjugating enzyme UBC9 [KO:K10577]
BBBOND_0405430  -UMO-conjugating enzyme UBC9-B [KO:K10577]
BBBOND_0311440  hypothetical protein [KO:K14004]
BBBOND_0311510  Protein transport protein SEC13 [KO:K14004]
BBBOND_0207370  membrane protein, putative [KO:K14314]
BBBOND_0102660  hypothetical protein, conserved [KO:K20724]
BBBOND_0313640  armadillo/beta-catenin-like repeat domain containing protein, putative [KO:K15042]
BBBOND_0403470  importin beta subunit, putative [KO:K14293]
BBBOND_0203860  transportin, putative [KO:K18752]
BBBOND_0104000  hypothetical protein, conserved [KO:K15436]
BBBOND_0210360  karyopherin beta, putative [KO:K20222]
BBBOND_0311400  IMPORTIN 7, 8, putative [KO:K20223]
BBBOND_0105960  hypothetical protein, conserved [KO:K25201]
BBBOND_0109850  SNURPORTIN1 (RNUT1 PROTEIN) (RNA, U TRANSPORTER 1), putative [KO:K13151]
BBBOND_0103020  exportin 1, putative [KO:K14290]
BBBOND_0204630  hypothetical protein, conserved [KO:K18423]
BBBOND_0211710  hypothetical protein, conserved [KO:K14289]
BBBOND_0202270  EXPORTIN 7-RELATED / RAN BINDING domain containing PROTEIN [KO:K18460]
BBBOND_0108660  GTP-binding nuclear protein Ran, putative [KO:K07936]
BBBOND_0108320  ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) protein, putative [KO:K03231]
BBBOND_0108330  TRANSLATION elongation factor, putative [KO:K03231]
BBBOND_0208350  hypothetical protein, conserved [KO:K12882]
BBBOND_0105490  nuclear cap-binding protein, putative [KO:K12883]
BBBOND_0106960  nonsense-mediated mRNA decay protein, putative [KO:K07562]
BBBOND_0303340  RNA recognition motif domain containing protein, putative [KO:K12876]
BBBOND_0203800  mago nashi protein, putative [KO:K12877]
BBBOND_0108740  eukaryotic initiation factor 4A-3 (eIF4A-3), putative [KO:K13025] [EC:5.6.2.7]
BBBOND_0101310  THO complex subunit 4 [KO:K12881]
BBBOND_0211760  eIF-4A-like DEAD family RNA helicase, putative [KO:K12812] [EC:5.6.2.7]
BBBOND_0306570  THO complex subunit 3 [KO:K12880]
Reference
  Authors
Tran EJ, Wente SR
  Title
Dynamic nuclear pore complexes: life on the edge.
  Journal
Cell 125:1041-53 (2006)
DOI:10.1016/j.cell.2006.05.027
Reference
  Authors
Rodriguez MS, Dargemont C, Stutz F
  Title
Nuclear export of RNA.
  Journal
Biol Cell 96:639-55 (2004)
DOI:10.1016/j.biolcel.2004.04.014
Reference
  Authors
Palancade B, Doye V
  Title
Sumoylating and desumoylating enzymes at nuclear pores: underpinning their unexpected duties?
  Journal
Trends Cell Biol 18:174-83 (2008)
DOI:10.1016/j.tcb.2008.02.001
Reference
  Authors
Reed R, Cheng H
  Title
TREX, SR proteins and export of mRNA.
  Journal
Curr Opin Cell Biol 17:269-73 (2005)
DOI:10.1016/j.ceb.2005.04.011
Reference
  Authors
Tange TO, Shibuya T, Jurica MS, Moore MJ
  Title
Biochemical analysis of the EJC reveals two new factors and a stable tetrameric protein core.
  Journal
RNA 11:1869-83 (2005)
DOI:10.1261/rna.2155905
Reference
  Authors
Beck M, Schirmacher P, Singer S
  Title
Alterations of the nuclear transport system in hepatocellular carcinoma - New basis for therapeutic strategies.
  Journal
J Hepatol 67:1051-1061 (2017)
DOI:10.1016/j.jhep.2017.06.021
Related
pathway
bbig03015  mRNA surveillance pathway
KO pathway
ko03013   
LinkDB

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