KEGG   PATHWAY: bbr00630
Entry
bbr00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bordetella bronchiseptica RB50
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbr00630  Glyoxylate and dicarboxylate metabolism
bbr00630

Module
bbr_M00012  Glyoxylate cycle [PATH:bbr00630]
bbr_M00621  Glycine cleavage system [PATH:bbr00630]
Other DBs
GO: 0046487 0043648
Organism
Bordetella bronchiseptica RB50 [GN:bbr]
Gene
BB3339  aceA; putative isocitrate lyase [KO:K01637] [EC:4.1.3.1]
BB3695  putative AMP-binding protein [KO:K01895] [EC:6.2.1.1]
BB0615  AMP-binding enzyme [KO:K01895] [EC:6.2.1.1]
BB3725  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
BB1153  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
BB0095  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
BB3684  mdH; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BB3677  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BB2822  conserved hypothetical protein [KO:K01647] [EC:2.3.3.1]
BB1342  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BB1844  acnA; putative aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BB1850  acnB; putative aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BB4804  probable thiolase [KO:K00626] [EC:2.3.1.9]
BB4250  probable thiolase [KO:K00626] [EC:2.3.1.9]
BB0614  putative thiolase [KO:K00626] [EC:2.3.1.9]
BB3364  putative thiolase [KO:K00626] [EC:2.3.1.9]
BB0546  conserved hypothetical protein [KO:K00626] [EC:2.3.1.9]
BB4947  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BB3547  conserved hypothetical protein [KO:K00626] [EC:2.3.1.9]
BB1795  Putative thiolase [KO:K00626] [EC:2.3.1.9]
BB2774  Putative ketoacyl CoA thiolase [KO:K00626] [EC:2.3.1.9]
BB3140  putative thiolase [KO:K00626] [EC:2.3.1.9]
BB0578  conserved hypothetical protein [KO:K00626] [EC:2.3.1.9]
BB0665  probable thiolase [KO:K00626] [EC:2.3.1.9]
BB3595  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
BB1152  conserved hypothetical protein [KO:K17865] [EC:4.2.1.55]
BB3872  methylaspartate ammonia-lyase [KO:K04835] [EC:4.3.1.2]
BB4337  putative methylaspartate ammonia-lyase [KO:K04835] [EC:4.3.1.2]
BB1938  glcD; glycolate oxidase subunit [KO:K00104] [EC:1.1.99.14]
BB1939  glcE; glycolate oxidase subunit [KO:K11472] [EC:1.1.99.14]
BB1940  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BB4994  katA; catalase [KO:K03781] [EC:1.11.1.6]
BB1874  putative 2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BB0425  putative 2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BB0250  probable haloacid dehalogenase-like hydrolase [KO:K01091] [EC:3.1.3.18]
BB3767  probable hydrolase [KO:K01091] [EC:3.1.3.18]
BB4625  gph; putative phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BB4671  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BB2954  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BB0708  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BB4348  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BB0856  gcvP; glycine cleavage system P protein [KO:K00281] [EC:1.4.4.2]
BB0854  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
BB3010  putative pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
BB4695  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BB2538  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BB3667  odhL; 2-oxoglutarate dehydrogenase complex, E3 component [KO:K00382] [EC:1.8.1.4]
BB0855  gcvH; glycine cleavage system H protein [KO:K02437]
BB2444  putative exported protein [KO:K01816] [EC:5.3.1.22]
BB4099  garK; glycerate kinase [KO:K00865] [EC:2.7.1.165]
BB4539  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BB1886  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BB1402  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
BB1319  fdsD; putative NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
BB2121  fdhA; formate dehydrogenase large subunit precursor [KO:K00123] [EC:1.17.1.9]
BB1321  fdsA; NAD-dependent formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
BB2122  fdhB; formate dehydrogenase iron-sulfur subunit [KO:K00124]
BB1322  fdsB; NAD-dependent formate dehydrogenase beta subunit [KO:K00124]
BB2124  fdhC; formate dehydrogenase subunit C precursor [KO:K00127]
BB1323  fdsG; NAD-dependent formate dehydrogenase gamma subunit [KO:K00127]
BB4423  putative esterase [KO:K01432] [EC:3.5.1.9]
BB3259  conserved hypothetical protein [KO:K07130] [EC:3.5.1.9]
BB4045  putative formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BB1405  fmdA; formamidase [KO:K01455] [EC:3.5.1.49]
BB4732  hutG; putative N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
BB0639  conserved hypothetical protein [KO:K01458] [EC:3.5.1.68]
BB1304  conserved hypothetical protein [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bbr00010  Glycolysis / Gluconeogenesis
bbr00020  Citrate cycle (TCA cycle)
bbr00030  Pentose phosphate pathway
bbr00053  Ascorbate and aldarate metabolism
bbr00071  Fatty acid degradation
bbr00230  Purine metabolism
bbr00250  Alanine, aspartate and glutamate metabolism
bbr00260  Glycine, serine and threonine metabolism
bbr00620  Pyruvate metabolism
bbr00710  Carbon fixation by Calvin cycle
bbr00750  Vitamin B6 metabolism
bbr00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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