KEGG   PATHWAY: bcac00020
Entry
bcac00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacteroides caccae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcac00020  Citrate cycle (TCA cycle)
bcac00020

Module
bcac_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcac00020]
bcac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcac00020]
bcac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcac00020]
bcac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcac00020]
bcac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcac00020]
Other DBs
GO: 0006099
Organism
Bacteroides caccae [GN:bcac]
Gene
CGC64_18215  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CGC64_18225  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CGC64_18220  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CGC64_10215  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
CGC64_03615  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGC64_10205  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGC64_10290  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CGC64_02605  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CGC64_10280  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CGC64_02610  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CGC64_10275  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CGC64_10295  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
CGC64_13280  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CGC64_13285  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CGC64_03105  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CGC64_03110  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CGC64_03100  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
CGC64_00395  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CGC64_06275  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CGC64_01200  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CGC64_16720  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
CGC64_02310  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CGC64_16830  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcac00010  Glycolysis / Gluconeogenesis
bcac00053  Ascorbate and aldarate metabolism
bcac00061  Fatty acid biosynthesis
bcac00190  Oxidative phosphorylation
bcac00220  Arginine biosynthesis
bcac00250  Alanine, aspartate and glutamate metabolism
bcac00280  Valine, leucine and isoleucine degradation
bcac00350  Tyrosine metabolism
bcac00470  D-Amino acid metabolism
bcac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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