KEGG   PATHWAY: bceo03430
Entry
bceo03430                   Pathway                                
Name
Mismatch repair - Burkholderia cenocepacia H111
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
bceo03430  Mismatch repair
bceo03430

Other DBs
GO: 0006298
Organism
Burkholderia cenocepacia H111 [GN:bceo]
Gene
I35_2088  mutS; DNA mismatch repair protein MutS [KO:K03555]
I35_0621  mutL; DNA mismatch repair protein MutL [KO:K03572]
I35_1347  ATP-dependent DNA helicase UvrD/PcrA [KO:K03657] [EC:5.6.2.4]
I35_2615  Exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
I35_4827  Exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
I35_2117  Single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
I35_2844  ssb; Single-stranded DNA-binding protein [KO:K03111]
I35_2336  dnaE; DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
I35_3246  dnaN; DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
I35_1818  dnaX; DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
I35_0504  holA; DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
I35_1883  DNA polymerase III delta prime subunit [KO:K02341] [EC:2.7.7.7]
I35_0864  DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
I35_1167  dnaQ; DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
I35_1985  DNA polymerase III alpha subunit [KO:K02342] [EC:2.7.7.7]
I35_2535  DNA polymerase III chi subunit [KO:K02339] [EC:2.7.7.7]
I35_2022  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
I35_2397  gp10; DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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