KEGG   PATHWAY: beba00630
Entry
beba00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Betaproteobacteria bacterium GR16-43
Class
Metabolism; Carbohydrate metabolism
Pathway map
beba00630  Glyoxylate and dicarboxylate metabolism
beba00630

Module
beba_M00621  Glycine cleavage system [PATH:beba00630]
Other DBs
GO: 0046487 0043648
Organism
Betaproteobacteria bacterium GR16-43 [GN:beba]
Gene
BWI17_05810  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
BWI17_20430  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
BWI17_20440  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
BWI17_06075  malate synthase A [KO:K01638] [EC:2.3.3.9]
BWI17_17685  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BWI17_17525  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BWI17_17600  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BWI17_17620  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BWI17_01035  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BWI17_21030  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BWI17_17055  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BWI17_04635  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BWI17_04770  acetyl-CoA acyltransferase [KO:K00626] [EC:2.3.1.9]
BWI17_14120  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
BWI17_14135  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
BWI17_17565  hypothetical protein [KO:K14449] [EC:4.2.1.148]
BWI17_00780  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
BWI17_00785  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
BWI17_00775  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
BWI17_00765  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BWI17_18140  catalase HPII [KO:K03781] [EC:1.11.1.6]
BWI17_09500  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BWI17_01290  hypothetical protein [KO:K01091] [EC:3.1.3.18]
BWI17_15830  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
BWI17_03085  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BWI17_11080  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BWI17_16065  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BWI17_09195  alanine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BWI17_13840  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BWI17_05695  glutamate synthase large subunit [KO:K00284] [EC:1.4.7.1]
BWI17_20760  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BWI17_18905  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BWI17_13845  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BWI17_14830  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
BWI17_14820  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
BWI17_18835  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BWI17_19775  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BWI17_17500  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BWI17_14825  glycine cleavage system protein H [KO:K02437]
BWI17_09420  hypothetical protein [KO:K01816] [EC:5.3.1.22]
BWI17_08960  glycerate kinase [KO:K11529] [EC:2.7.1.165]
BWI17_09785  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BWI17_11840  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BWI17_13430  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
BWI17_09365  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
BWI17_09360  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
BWI17_13435  formate dehydrogenase [KO:K00124]
BWI17_13445  formate dehydrogenase subunit gamma [KO:K00127]
BWI17_00070  hypothetical protein [KO:K01432] [EC:3.5.1.9]
BWI17_18770  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
BWI17_09280  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
BWI17_09285  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
beba00010  Glycolysis / Gluconeogenesis
beba00020  Citrate cycle (TCA cycle)
beba00030  Pentose phosphate pathway
beba00053  Ascorbate and aldarate metabolism
beba00071  Fatty acid degradation
beba00230  Purine metabolism
beba00250  Alanine, aspartate and glutamate metabolism
beba00260  Glycine, serine and threonine metabolism
beba00620  Pyruvate metabolism
beba00710  Carbon fixation by Calvin cycle
beba00750  Vitamin B6 metabolism
beba00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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