KEGG   PATHWAY: bfn00630
Entry
bfn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia fungorum
Class
Metabolism; Carbohydrate metabolism
Pathway map
bfn00630  Glyoxylate and dicarboxylate metabolism
bfn00630

Module
bfn_M00012  Glyoxylate cycle [PATH:bfn00630]
bfn_M00621  Glycine cleavage system [PATH:bfn00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia fungorum [GN:bfn]
Gene
OI25_3113  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
OI25_6882  AMP-binding enzyme family protein [KO:K01895] [EC:6.2.1.1]
OI25_335  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
OI25_3495  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
OI25_5030  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
OI25_3576  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
OI25_3109  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
OI25_5314  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OI25_7902  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OI25_6901  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
OI25_5307  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
OI25_2241  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
OI25_3022  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
OI25_6093  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
OI25_5319  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
OI25_3956  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
OI25_7318  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
OI25_7413  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
OI25_1238  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
OI25_3392  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
OI25_3421  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
OI25_3526  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
OI25_6406  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
OI25_5588  3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein [KO:K00626] [EC:2.3.1.9]
OI25_4595  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
OI25_4601  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
OI25_3393  phbB-1; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
OI25_7353  hpcH/HpaI aldolase/citrate lyase family protein [KO:K08691] [EC:4.1.3.24 4.1.3.25]
OI25_5771  hpcH/HpaI aldolase/citrate lyase family protein [KO:K08691] [EC:4.1.3.24 4.1.3.25]
OI25_4927  hypothetical protein [KO:K01847] [EC:5.4.99.2]
OI25_978  hypothetical protein [KO:K00104] [EC:1.1.99.14]
OI25_3580  glcD; glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
OI25_979  FAD binding domain protein [KO:K11472] [EC:1.1.99.14]
OI25_3579  FAD binding domain protein [KO:K11472] [EC:1.1.99.14]
OI25_980  4Fe-4S binding domain protein [KO:K11473] [EC:1.1.99.14]
OI25_3578  4Fe-4S binding domain protein [KO:K11473] [EC:1.1.99.14]
OI25_988  katA; catalase [KO:K03781] [EC:1.11.1.6]
OI25_6081  catA; catalase [KO:K03781] [EC:1.11.1.6]
OI25_3919  catalase family protein [KO:K03781] [EC:1.11.1.6]
OI25_4993  catalase family protein [KO:K03781] [EC:1.11.1.6]
OI25_4100  catalase family protein [KO:K03781] [EC:1.11.1.6]
OI25_4798  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
OI25_1249  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
OI25_4760  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
OI25_3280  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
OI25_5022  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
OI25_2492  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
OI25_5838  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00018] [EC:1.1.1.29]
OI25_7295  hprA; glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
OI25_6270  putative 2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
OI25_7351  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00018] [EC:1.1.1.29]
OI25_7363  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00018] [EC:1.1.1.29]
OI25_1916  gph; phosphoglycolate phosphatase, bacterial [KO:K01091] [EC:3.1.3.18]
OI25_2501  HAD hydrolase, IA, variant 1 family protein [KO:K01091] [EC:3.1.3.18]
OI25_5414  aminotransferase class-V family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
OI25_909  beta-eliminating lyase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
OI25_2822  glnA; glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
OI25_3609  glutamine synthetase, catalytic domain protein [KO:K01915] [EC:6.3.1.2]
OI25_6717  glutamine synthetase, catalytic domain protein [KO:K01915] [EC:6.3.1.2]
OI25_6868  glutamine synthetase, catalytic domain protein [KO:K01915] [EC:6.3.1.2]
OI25_934  beta-eliminating lyase family protein [KO:K00600] [EC:2.1.2.1]
OI25_4016  glyA2; serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
OI25_1563  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
OI25_1565  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
OI25_6  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OI25_2839  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OI25_1564  gcvH; glycine cleavage system H protein [KO:K02437]
OI25_3330  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
OI25_3329  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
OI25_4252  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
OI25_3458  glycerate kinase family protein [KO:K00865] [EC:2.7.1.165]
OI25_3592  aldehyde dehydrogenase family protein [KO:K07248] [EC:1.2.1.22 1.2.1.21]
OI25_4036  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
OI25_4773  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
OI25_2041  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
OI25_2401  NADH-dependent formate dehydrogenase delta subunit FdsD family protein [KO:K00126] [EC:1.17.1.9]
OI25_2402  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
OI25_5119  fdnG; formate dehydrogenase-N alpha subunit [KO:K00123] [EC:1.17.1.9]
OI25_5120  molybdopterin oxidoreductase Fe4S4 domain protein [KO:K00123] [EC:1.17.1.9]
OI25_2403  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region family protein [KO:K00124]
OI25_5118  fdxH; formate dehydrogenase, beta subunit [KO:K00124]
OI25_2404  thioredoxin-like [2Fe-2S] ferredoxin family protein [KO:K00127]
OI25_5117  formate dehydrogenase, gamma subunit [KO:K00127]
OI25_3886  alpha/beta hydrolase fold family protein [KO:K01432] [EC:3.5.1.9]
OI25_5683  alpha/beta hydrolase fold family protein [KO:K01432] [EC:3.5.1.9]
OI25_2195  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
OI25_1098  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
OI25_4006  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
OI25_4187  formamidase [KO:K01455] [EC:3.5.1.49]
OI25_191  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
OI25_5904  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
OI25_5903  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
OI25_4573  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bfn00010  Glycolysis / Gluconeogenesis
bfn00020  Citrate cycle (TCA cycle)
bfn00030  Pentose phosphate pathway
bfn00053  Ascorbate and aldarate metabolism
bfn00071  Fatty acid degradation
bfn00230  Purine metabolism
bfn00250  Alanine, aspartate and glutamate metabolism
bfn00260  Glycine, serine and threonine metabolism
bfn00620  Pyruvate metabolism
bfn00710  Carbon fixation by Calvin cycle
bfn00750  Vitamin B6 metabolism
bfn00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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