KEGG   PATHWAY: bgd00630
Entry
bgd00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Burkholderia gladioli BSR3
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgd00630  Glyoxylate and dicarboxylate metabolism
bgd00630

Module
bgd_M00012  Glyoxylate cycle [PATH:bgd00630]
bgd_M00621  Glycine cleavage system [PATH:bgd00630]
Other DBs
GO: 0046487 0043648
Organism
Burkholderia gladioli BSR3 [GN:bgd]
Gene
bgla_1g25970  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
bgla_1g28680  Acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
bgla_1g14050  AMP-binding enzyme [KO:K01895] [EC:6.2.1.1]
bgla_2g08940  Acyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
bgla_1g26010  malate synthase [KO:K01638] [EC:2.3.3.9]
bgla_2g27630  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
bgla_2g18330  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
bgla_1g14960  citrate synthase [KO:K01647] [EC:2.3.3.1]
bgla_1g32410  citrate synthase [KO:K01647] [EC:2.3.3.1]
bgla_2g18260  citrate synthase I [KO:K01647] [EC:2.3.3.1]
bgla_2g24090  aconitate hydratase domain-containing protein [KO:K01681] [EC:4.2.1.3]
bgla_2g18370  Aconitase A [KO:K01681] [EC:4.2.1.3]
bgla_1g19470  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
bgla_1g36190  Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
bgla_1g20100  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
bgla_1g23710  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
bgla_1g22610  Beta-ketothiolase [KO:K00626] [EC:2.3.1.9]
bgla_1g22670  Thiolase [KO:K00626] [EC:2.3.1.9]
bgla_1g36950  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
bgla_1g22660  Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
bgla_1g21340  Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
bgla_2g01690  MaoC-like dehydratase [KO:K17865] [EC:4.2.1.55]
bgla_1g06580  FAD linked oxidase-like protein [KO:K00104] [EC:1.1.99.14]
bgla_1g06570  Glycolate oxidase, subunit GlcE [KO:K11472] [EC:1.1.99.14]
bgla_1g06560  hypothetical protein [KO:K11473] [EC:1.1.99.14]
bgla_1g00180  Catalase [KO:K03781] [EC:1.11.1.6]
bgla_2g27730  Catalase [KO:K03781] [EC:1.11.1.6]
bgla_2g04110  putative catalase [KO:K03781] [EC:1.11.1.6]
bgla_1g16590  Catalase [KO:K03781] [EC:1.11.1.6]
bgla_1g12230  hypothetical protein [KO:K03781] [EC:1.11.1.6]
bgla_2g27370  Catalase [KO:K03781] [EC:1.11.1.6]
bgla_1g02940  putative 2-hydroxyacid dehydrogenase family protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
bgla_1g36480  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
bgla_2g20790  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
bgla_2g08130  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
bgla_1g22210  Gluconate 2-dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
bgla_1g10220  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
bgla_1g04770  Predicted phosphatase [KO:K01091] [EC:3.1.3.18]
bgla_2g15950  Hydrolase, haloacid dehalogenase-like family protein [KO:K01091] [EC:3.1.3.18]
bgla_2g17790  HAD-superfamily hydrolase, subfamily IA, variant 3 [KO:K01091] [EC:3.1.3.18]
bgla_1g10310  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
bgla_2g25250  hypothetical protein [KO:K01091] [EC:3.1.3.18]
bgla_1g28260  Glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
bgla_1g28370  Putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
bgla_2g04800  Serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
bgla_1g07320  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
bgla_1g01180  Glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
bgla_1g01200  Glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
bgla_2g03070  hypothetical protein [KO:K00382] [EC:1.8.1.4]
bgla_1g28040  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
bgla_1g18080  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
bgla_1g01190  Glycine cleavage system H protein [KO:K02437]
bgla_1g23490  Glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
bgla_1g23500  Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
bgla_1g23510  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
bgla_1g23950  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
bgla_2g05420  aldehyde dehydrogenase A [KO:K07248] [EC:1.2.1.22 1.2.1.21]
bgla_2g00140  Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
bgla_2g29110  3-isopropylmalate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
bgla_1g05900  4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
bgla_1g08510  Cupin family protein [KO:K01569] [EC:4.1.1.2]
bgla_2g07050  putative oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
bgla_1g09410  NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
bgla_2g17890  Formate dehydrogenase-O, major subunit [KO:K00123] [EC:1.17.1.9]
bgla_2g17900  Molybdopterin oxidoreductase Fe4S4 region [KO:K00123] [EC:1.17.1.9]
bgla_1g09420  hypothetical protein [KO:K00123] [EC:1.17.1.9]
bgla_1g09430  Formate dehydrogenase, beta subunit [KO:K00124]
bgla_2g17880  Fe-S-cluster-containing hydrogenase components 1 [KO:K00124]
bgla_1g09440  Formate dehydrogenase, gamma subunit [KO:K00127]
bgla_2g17870  Formate dehydrogenase, gamma subunit [KO:K00127]
bgla_2g03820  esterase/lipase-like protein [KO:K01432] [EC:3.5.1.9]
bgla_1g32820  cyclase, putative [KO:K07130] [EC:3.5.1.9]
bgla_1g34770  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
bgla_2g08640  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
bgla_1g26790  formamidase [KO:K01455] [EC:3.5.1.49]
bgla_2g06290  acetamidase/formamidase [KO:K01455] [EC:3.5.1.49]
bgla_2g03620  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
bgla_1g28420  HutG protein [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bgd00010  Glycolysis / Gluconeogenesis
bgd00020  Citrate cycle (TCA cycle)
bgd00030  Pentose phosphate pathway
bgd00053  Ascorbate and aldarate metabolism
bgd00071  Fatty acid degradation
bgd00230  Purine metabolism
bgd00250  Alanine, aspartate and glutamate metabolism
bgd00260  Glycine, serine and threonine metabolism
bgd00620  Pyruvate metabolism
bgd00710  Carbon fixation by Calvin cycle
bgd00750  Vitamin B6 metabolism
bgd00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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