KEGG   PATHWAY: bgl00300
Entry
bgl00300                    Pathway                                
Name
Lysine biosynthesis - Burkholderia glumae BGR1
Class
Metabolism; Amino acid metabolism
Pathway map
bgl00300  Lysine biosynthesis
bgl00300

Module
bgl_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:bgl00300]
Other DBs
GO: 0009085
Organism
Burkholderia glumae BGR1 [GN:bgl]
Gene
bglu_1g14150  Homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
bglu_2g03030  Homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
bglu_1g23580  asparate kinase, monofunctional class [KO:K00928] [EC:2.7.2.4]
bglu_2g08380  Aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
bglu_1g10630  Dihydrodipicolinate synthetase family protein [KO:K01714] [EC:4.3.3.7]
bglu_1g21800  Dihydrodipicolinate synthetase [KO:K01714] [EC:4.3.3.7]
bglu_2g08880  Dihydrodipicolinate synthetase [KO:K01714] [EC:4.3.3.7]
bglu_2g15130  Putative dihydrodipicolinate synthase [KO:K01714] [EC:4.3.3.7]
bglu_2g15200  Dihydrodipicolinate synthase [KO:K01714] [EC:4.3.3.7]
bglu_1g24390  Dihydrodipicolinate synthase [KO:K01714] [EC:4.3.3.7]
bglu_1g05430  Dihydrodipicolinate reductase [KO:K00215] [EC:1.17.1.8]
bglu_1g12600  2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [KO:K00674] [EC:2.3.1.117]
bglu_1g28590  acetylornithine transaminase protein [KO:K00821] [EC:2.6.1.11 2.6.1.17]
bglu_1g12610  succinyldiaminopimelate transaminase [KO:K14267] [EC:2.6.1.17]
bglu_1g12580  Succinyl-diaminopimelate desuccinylase [KO:K01439] [EC:3.5.1.18]
bglu_1g33700  Diaminopimelate epimerase [KO:K01778] [EC:5.1.1.7]
bglu_1g02950  Diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
bglu_1g26860  aminotransferase family protein [KO:K05825] [EC:2.6.1.-]
bglu_2g18730  Putative transcriptional regulator, GntR family [KO:K05825] [EC:2.6.1.-]
bglu_1g04570  UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [KO:K01928] [EC:6.3.2.13]
bglu_1g04580  UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase [KO:K01929] [EC:6.3.2.10]
Compound
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00047  L-Lysine
C00049  L-Aspartate
C00263  L-Homoserine
C00322  2-Oxoadipate
C00441  L-Aspartate 4-semialdehyde
C00449  N6-(L-1,3-Dicarboxypropyl)-L-lysine
C00666  LL-2,6-Diaminoheptanedioate
C00680  meso-2,6-Diaminoheptanedioate
C00956  L-2-Aminoadipate
C01251  (R)-2-Hydroxybutane-1,2,4-tricarboxylate
C03082  4-Phospho-L-aspartate
C03871  L-2-Amino-6-oxoheptanedioate
C03972  2,3,4,5-Tetrahydrodipicolinate
C04002  (Z)-But-1-ene-1,2,4-tricarboxylate
C04076  L-2-Aminoadipate 6-semialdehyde
C04390  N6-Acetyl-LL-2,6-diaminoheptanedioate
C04421  N-Succinyl-LL-2,6-diaminoheptanedioate
C04462  N-Succinyl-2-L-amino-6-oxoheptanedioate
C04877  UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimelate
C04882  UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine
C05535  alpha-Aminoadipoyl-S-acyl enzyme
C05539  N-Acetyl-L-2-amino-6-oxopimelate
C05560  L-2-Aminoadipate adenylate
C05662  Homoisocitrate
C16138  L-Pyrrolysine
C19886  LysW-gamma-L-alpha-aminoadipate
C19887  LysW-gamma-L-alpha-aminoadipyl 6-phosphate
C19888  LysW-gamma-L-alpha-aminoadipate 6-semialdehyde
C19889  LysW-gamma-L-lysine
C20258  (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydrodipicolinate
C20277  (2R,3R)-3-Methylornithine
C20278  (2R,3R)-3-Methylornithinyl-N6-lysine
C20279  (2R,3R)-3-Methylglutamyl-5-semialdehyde-N6-lysine
Reference
  Authors
Ledwidge R, Blanchard JS.
  Title
The dual biosynthetic capability of N-acetylornithine aminotransferase in arginine and lysine biosynthesis.
  Journal
Biochemistry 38:3019-3024 (1999)
DOI:10.1021/bi982574a
Reference
  Authors
Fuchs TM, Schneider B, Krumbach K, Eggeling L, Gross R.
  Title
Characterization of a bordetella pertussis diaminopimelate (DAP) biosynthesis locus identifies dapC, a novel gene coding for an N-succinyl-L,L-DAP aminotransferase.
  Journal
J Bacteriol 182:3626-3631 (2000)
DOI:10.1128/JB.182.13.3626-3631.2000
Reference
  Authors
Zabriskie TM, Jackson MD.
  Title
Lysine biosynthesis and metabolism in fungi.
  Journal
Nat Prod Rep 17:85-97 (2000)
DOI:10.1039/A801345D
Reference
  Authors
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS.
  Title
Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?
  Journal
Nucleic Acids Res 31:6748-57 (2003)
DOI:10.1093/nar/gkg900
Reference
  Authors
Velasco AM, Leguina JI, Lazcano A.
  Title
Molecular evolution of the lysine biosynthetic pathways.
  Journal
J Mol Evol 55:445-59 (2002)
DOI:10.1007/s00239-002-2340-2
Reference
  Authors
Miyazaki T, Miyazaki J, Yamane H, Nishiyama M.
  Title
alpha-Aminoadipate aminotransferase from an extremely thermophilic bacterium, Thermus thermophilus.
  Journal
Microbiology 150:2327-34 (2004)
DOI:10.1099/mic.0.27037-0
Reference
  Authors
Goh DL, Patel A, Thomas GH, Salomons GS, Schor DS, Jakobs C, Geraghty MT.
  Title
Characterization of the human gene encoding alpha-aminoadipate aminotransferase (AADAT).
  Journal
Mol Genet Metab 76:172-80 (2002)
DOI:10.1016/S1096-7192(02)00037-9
Reference
  Authors
Nishiyama M.
  Title
[Novel lysine biosynthesis: a key to elucidate evolution of metabolic and biosynthetic pathways]
  Journal
Tanpakushitsu Kakusan Koso 49:758-63 (2004)
Reference
  Authors
Nishida H, Nishiyama M, Kobashi N, Kosuge T, Hoshino T, Yamane H.
  Title
A prokaryotic gene cluster involved in synthesis of lysine through the amino adipate pathway: a key to the evolution of amino acid biosynthesis.
  Journal
Genome Res 9:1175-83 (1999)
DOI:10.1101/gr.9.12.1175
Reference
  Authors
Sakai H, Vassylyeva MN, Matsuura T, Sekine S, Gotoh K, Nishiyama M, Terada T, Shirouzu M, Kuramitsu S, Vassylyev DG, Yokoyama S.
  Title
Crystal structure of a lysine biosynthesis enzyme, LysX, from Thermus thermophilus HB8.
  Journal
J Mol Biol 332:729-40 (2003)
DOI:10.1016/S0022-2836(03)00946-X
Reference
  Authors
Hudson AO, Singh BK, Leustek T, Gilvarg C.
  Title
An LL-diaminopimelate aminotransferase defines a novel variant of the lysine biosynthesis pathway in plants.
  Journal
Plant Physiol 140:292-301 (2006)
DOI:10.1104/pp.105.072629
Reference
  Authors
Horie A, Tomita T, Saiki A, Kono H, Taka H, Mineki R, Fujimura T, Nishiyama C, Kuzuyama T, Nishiyama M
  Title
Discovery of proteinaceous N-modification in lysine biosynthesis of Thermus thermophilus.
  Journal
Nat Chem Biol 5:673-9 (2009)
DOI:10.1038/nchembio.198
Reference
  Authors
Dairi T, Kuzuyama T, Nishiyama M, Fujii I
  Title
Convergent strategies in biosynthesis.
  Journal
Nat Prod Rep 28:1054-86 (2011)
DOI:10.1039/c0np00047g
Reference
  Authors
Gaston MA, Jiang R, Krzycki JA
  Title
Functional context, biosynthesis, and genetic encoding of pyrrolysine.
  Journal
Curr Opin Microbiol 14:342-9 (2011)
DOI:10.1016/j.mib.2011.04.001
Related
pathway
bgl00010  Glycolysis / Gluconeogenesis
bgl00020  Citrate cycle (TCA cycle)
bgl00250  Alanine, aspartate and glutamate metabolism
bgl00260  Glycine, serine and threonine metabolism
bgl00310  Lysine degradation
bgl00550  Peptidoglycan biosynthesis
bgl00620  Pyruvate metabolism
KO pathway
ko00300   
LinkDB

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