KEGG   PATHWAY: bju00630
Entry
bju00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium japonicum USDA 6
Class
Metabolism; Carbohydrate metabolism
Pathway map
bju00630  Glyoxylate and dicarboxylate metabolism
bju00630

Module
bju_M00012  Glyoxylate cycle [PATH:bju00630]
bju_M00621  Glycine cleavage system [PATH:bju00630]
bju_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bju00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium japonicum USDA 6 [GN:bju]
Gene
BJ6T_73810  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
BJ6T_05440  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
BJ6T_58780  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
BJ6T_19450  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
BJ6T_83710  malate synthase G [KO:K01638] [EC:2.3.3.9]
BJ6T_04250  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BJ6T_48720  citrate synthase [KO:K01647] [EC:2.3.3.1]
BJ6T_01950  citrate synthase [KO:K01647] [EC:2.3.3.1]
BJ6T_01960  citrate synthase [KO:K01647] [EC:2.3.3.1]
BJ6T_04350  aconitase [KO:K01681] [EC:4.2.1.3]
BJ6T_84410  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BJ6T_35290  acyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
BJ6T_74100  hypothetical protein [KO:K00626] [EC:2.3.1.9]
BJ6T_44530  thiolase [KO:K00626] [EC:2.3.1.9]
BJ6T_58870  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BJ6T_59120  acetyl CoA synthase [KO:K00626] [EC:2.3.1.9]
BJ6T_02450  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BJ6T_15350  beta-ketoadipyl CoA thiolase [KO:K00626] [EC:2.3.1.9]
BJ6T_19080  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BJ6T_68310  hypothetical protein [KO:K00626] [EC:2.3.1.9]
BJ6T_87120  acyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
BJ6T_02440  acetoacetyl CoA reductase [KO:K00023] [EC:1.1.1.36]
BJ6T_47870  hypothetical protein [KO:K05606] [EC:5.1.99.1]
BJ6T_45140  propionyl-coenzyme A carboxylase, alpha polypeptide [KO:K01965] [EC:6.4.1.3]
BJ6T_44330  propionyl-CoA carboxylase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
BJ6T_67080  hypothetical protein [KO:K01847] [EC:5.4.99.2]
BJ6T_67110  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
BJ6T_17460  glycolate oxidase subunit [KO:K00104] [EC:1.1.99.14]
BJ6T_17500  glycolate oxidase subunit [KO:K11472] [EC:1.1.99.14]
BJ6T_17510  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BJ6T_62510  hypothetical protein [KO:K03781] [EC:1.11.1.6]
BJ6T_12010  hypothetical protein [KO:K03781] [EC:1.11.1.6]
BJ6T_63010  sulfur regulated plasmid-encoded protein precursor [KO:K03781] [EC:1.11.1.6]
BJ6T_07700  hypothetical protein [KO:K00015] [EC:1.1.1.26]
BJ6T_27120  hypothetical protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BJ6T_22390  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BJ6T_45650  hypothetical protein [KO:K01091] [EC:3.1.3.18]
BJ6T_61280  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BJ6T_50190  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BJ6T_72230  ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
BJ6T_72220  ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit [KO:K01602] [EC:4.1.1.39]
BJ6T_03300  hypothetical aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BJ6T_36640  hypothetical protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BJ6T_36660  hypothetical protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BJ6T_47380  glutamine synthetase I [KO:K01915] [EC:6.3.1.2]
BJ6T_48760  glutamine synthetase I [KO:K01915] [EC:6.3.1.2]
BJ6T_77720  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BJ6T_10970  hypothetical protein [KO:K01915] [EC:6.3.1.2]
BJ6T_20770  hypothetical protein [KO:K01915] [EC:6.3.1.2]
BJ6T_56300  glutamine synthetase II [KO:K01915] [EC:6.3.1.2]
BJ6T_46770  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BJ6T_39820  glycine cleavage system protein P2 [KO:K00281] [EC:1.4.4.2]
BJ6T_39840  glycine cleavage system component T [KO:K00605] [EC:2.1.2.10]
BJ6T_04180  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BJ6T_49340  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BJ6T_39830  glycine cleavage system component H [KO:K02437]
BJ6T_65920  glyoxylate carboligase protein [KO:K01608] [EC:4.1.1.47]
BJ6T_65910  hydroxypyruvate isomerase protein [KO:K01816] [EC:5.3.1.22]
BJ6T_57510  hypothetical protein [KO:K00042] [EC:1.1.1.60]
BJ6T_65900  oxidoreductase [KO:K00042] [EC:1.1.1.60]
BJ6T_84520  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
BJ6T_28580  hypothetical protein [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BJ6T_68500  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BJ6T_59130  KHG-KDPG bifunctional aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BJ6T_14650  hypothetical protein [KO:K01569] [EC:4.1.1.2]
BJ6T_62210  hypothetical protein [KO:K01569] [EC:4.1.1.2]
BJ6T_62890  oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
BJ6T_66310  NAD-dependent formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
BJ6T_06920  hypothetical protein [KO:K00123] [EC:1.17.1.9]
BJ6T_66290  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
BJ6T_75220  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
BJ6T_15610  hypothetical protein [KO:K00123] [EC:1.17.1.9]
BJ6T_75230  hypothetical protein [KO:K22515] [EC:1.17.1.9]
BJ6T_66280  nuoF; NADH dehydrogenase I chain F [KO:K00124]
BJ6T_15620  formate dehydrogenase iron-sulfur subunit [KO:K00124]
BJ6T_06930  formate dehydrogenase iron-sulfur subunit [KO:K00124]
BJ6T_06940  hypothetical protein [KO:K00127]
BJ6T_66270  nuoE; NADH dehydrogenase I chain E [KO:K00127]
BJ6T_15630  formate dehydrogenase [KO:K00127]
BJ6T_56440  hypothetical protein [KO:K01432] [EC:3.5.1.9]
BJ6T_37480  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BJ6T_09920  amidase [KO:K01455] [EC:3.5.1.49]
BJ6T_66010  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
BJ6T_66020  hypothetical protein [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bju00010  Glycolysis / Gluconeogenesis
bju00020  Citrate cycle (TCA cycle)
bju00030  Pentose phosphate pathway
bju00053  Ascorbate and aldarate metabolism
bju00071  Fatty acid degradation
bju00230  Purine metabolism
bju00250  Alanine, aspartate and glutamate metabolism
bju00260  Glycine, serine and threonine metabolism
bju00620  Pyruvate metabolism
bju00710  Carbon fixation by Calvin cycle
bju00750  Vitamin B6 metabolism
bju00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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