KEGG   PATHWAY: bnn00020
Entry
bnn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brettanomyces nanus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bnn00020  Citrate cycle (TCA cycle)
bnn00020

Module
bnn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bnn00020]
bnn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bnn00020]
bnn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bnn00020]
bnn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bnn00020]
bnn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bnn00020]
Other DBs
GO: 0006099
Organism
Brettanomyces nanus [GN:bnn]
Gene
FOA43_002972  uncharacterized protein [KO:K01647] [EC:2.3.3.1]
FOA43_004014  ACO1; Aconitate hydratase mitochondrial [KO:K01681] [EC:4.2.1.3]
FOA43_002810  IDP2; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FOA43_004504  IDP1; Isocitrate dehydrogenase [NADP], mitochondrial precursor (Oxalosuccinate decarboxylase) [KO:K00031] [EC:1.1.1.42]
FOA43_000220  IDH1; isocitrate dehydrogenase (NAD(+)) idh1 [KO:K00030] [EC:1.1.1.41]
FOA43_002295  IDH2; NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
FOA43_003818  KGD1; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FOA43_004020  KGD2; 2-oxoglutarate dehydrogenase complex E2 component [KO:K00658] [EC:2.3.1.61]
FOA43_001580  LPD1; dihydrolipoamide dehydrogenase precursor [KO:K00382] [EC:1.8.1.4]
FOA43_003801  TCA8; Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
FOA43_002326  LSC2; succinate--CoA ligase beta chain [KO:K01900] [EC:6.2.1.4 6.2.1.5]
FOA43_004408  SDH1; succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
FOA43_002758  SDH2; succinate dehydrogenase complex, subunit B [KO:K00235] [EC:1.3.5.1]
FOA43_002906  uncharacterized protein [KO:K00236]
FOA43_002247  uncharacterized protein [KO:K00237]
FOA43_003136  FUM1; fumarase fum1 [KO:K01679] [EC:4.2.1.2]
FOA43_000112  uncharacterized protein [KO:K00026] [EC:1.1.1.37]
FOA43_002057  uncharacterized protein [KO:K00026] [EC:1.1.1.37]
FOA43_002234  MDH1; Malate dehydrogenase, cytoplasmic [KO:K00026] [EC:1.1.1.37]
FOA43_002666  uncharacterized protein [KO:K01958] [EC:6.4.1.1]
FOA43_001783  PCK1; Protein kinase C-like 1 [KO:K01610] [EC:4.1.1.49]
FOA43_001853  PDA1; alpha subunit of pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
FOA43_000168  PDB1; pyruvate dehydrogenase E1, beta subunit [KO:K00162] [EC:1.2.4.1]
FOA43_004796  uncharacterized protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bnn00010  Glycolysis / Gluconeogenesis
bnn00053  Ascorbate and aldarate metabolism
bnn00061  Fatty acid biosynthesis
bnn00062  Fatty acid elongation
bnn00071  Fatty acid degradation
bnn00190  Oxidative phosphorylation
bnn00220  Arginine biosynthesis
bnn00250  Alanine, aspartate and glutamate metabolism
bnn00280  Valine, leucine and isoleucine degradation
bnn00350  Tyrosine metabolism
bnn00470  D-Amino acid metabolism
bnn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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