KEGG   PATHWAY: boa00020
Entry
boa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacteroides ovatus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
boa00020  Citrate cycle (TCA cycle)
boa00020

Module
boa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:boa00020]
boa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:boa00020]
boa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:boa00020]
boa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:boa00020]
boa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:boa00020]
Other DBs
GO: 0006099
Organism
Bacteroides ovatus [GN:boa]
Gene
Bovatus_02114  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
Bovatus_02116  acoA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Bovatus_02115  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Bovatus_00156  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Bovatus_00154  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bovatus_03272  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bovatus_02921  korA_2; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Bovatus_00180  korA_1; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Bovatus_02922  korB_2; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Bovatus_00178  korB_1; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Bovatus_00177  porC; Pyruvate synthase subunit PorC [KO:K00177] [EC:1.2.7.3]
Bovatus_00181  boxA; Benzoyl-CoA oxygenase component A [KO:K00176] [EC:1.2.7.3]
Bovatus_00833  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Bovatus_00832  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Bovatus_03087  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Bovatus_03088  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Bovatus_03086  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00241]
Bovatus_02322  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
Bovatus_02656  mdh_1; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Bovatus_04024  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Bovatus_03103  Methylmalonyl-CoA carboxyltransferase 5S subunit [KO:K01960] [EC:6.4.1.1]
Bovatus_01783  cfiA; 2-oxoglutarate carboxylase large subunit [KO:K01960] [EC:6.4.1.1]
Bovatus_02855  pckA; Phosphoenolpyruvate carboxykinase ATP [KO:K01610] [EC:4.1.1.49]
Bovatus_01815  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
boa00010  Glycolysis / Gluconeogenesis
boa00053  Ascorbate and aldarate metabolism
boa00061  Fatty acid biosynthesis
boa00190  Oxidative phosphorylation
boa00220  Arginine biosynthesis
boa00250  Alanine, aspartate and glutamate metabolism
boa00280  Valine, leucine and isoleucine degradation
boa00350  Tyrosine metabolism
boa00470  D-Amino acid metabolism
boa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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