KEGG   PATHWAY: boe00630
Entry
boe00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Brassica oleracea (wild cabbage)
Class
Metabolism; Carbohydrate metabolism
Pathway map
boe00630  Glyoxylate and dicarboxylate metabolism
boe00630

Module
boe_M00012  Glyoxylate cycle [PATH:boe00630]
boe_M00621  Glycine cleavage system [PATH:boe00630]
Other DBs
GO: 0046487 0043648
Organism
Brassica oleracea (wild cabbage) [GN:boe]
Gene
106329442  LOW QUALITY PROTEIN: isocitrate lyase [KO:K01637] [EC:4.1.3.1]
106343626  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
106342539  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
106295493  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
106327490  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
106318737  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
106293213  malate dehydrogenase, cytoplasmic 1 [KO:K00025] [EC:1.1.1.37]
106307165  malate dehydrogenase, cytoplasmic 1-like [KO:K00025] [EC:1.1.1.37]
106319444  malate dehydrogenase, cytoplasmic 1 [KO:K00025] [EC:1.1.1.37]
106328331  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
106344959  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
106318964  malate dehydrogenase 2, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
106296346  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
106302879  probable malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
106336113  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
106301033  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
106336611  probable malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
106326868  malate dehydrogenase 2, glyoxysomal [KO:K00026] [EC:1.1.1.37]
106311978  citrate synthase 2, peroxisomal [KO:K01647] [EC:2.3.3.1]
106311979  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
106309187  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
106342856  citrate synthase 4, mitochondrial [KO:K01647] [EC:2.3.3.1]
106339817  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
106328208  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
106301011  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
106342475  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
106342711  citrate synthase 5, mitochondrial [KO:K01647] [EC:2.3.3.1]
106335251  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
106306006  aconitate hydratase 2, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
106311729  aconitate hydratase 3, mitochondrial [KO:K01681] [EC:4.2.1.3]
106334951  aconitate hydratase 2, mitochondrial [KO:K01681] [EC:4.2.1.3]
106308688  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
106317871  probable acetyl-CoA acetyltransferase, cytosolic 2 isoform X1 [KO:K00626] [EC:2.3.1.9]
106306673  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
106313526  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
106292313  peroxisomal (S)-2-hydroxy-acid oxidase GLO3-like [KO:K11517] [EC:1.1.3.15]
106317359  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
106299500  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 isoform X1 [KO:K11517] [EC:1.1.3.15]
106294051  peroxisomal (S)-2-hydroxy-acid oxidase GLO3-like [KO:K11517] [EC:1.1.3.15]
106331480  peroxisomal (S)-2-hydroxy-acid oxidase GLO3-like [KO:K11517] [EC:1.1.3.15]
106295477  peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
106334496  peroxisomal (S)-2-hydroxy-acid oxidase GLO2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
106301935  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 [KO:K11517] [EC:1.1.3.15]
106317108  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
106335797  catalase-2 [KO:K03781] [EC:1.11.1.6]
106306448  catalase-2-like [KO:K03781] [EC:1.11.1.6]
106293157  catalase-1-like [KO:K03781] [EC:1.11.1.6]
106311776  catalase-3-like [KO:K03781] [EC:1.11.1.6]
106305679  catalase-3 [KO:K03781] [EC:1.11.1.6]
106305680  catalase-1 [KO:K03781] [EC:1.11.1.6]
106294884  catalase-3-like [KO:K03781] [EC:1.11.1.6]
106292640  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
106300614  glyoxylate/hydroxypyruvate reductase A HPR2 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
106298235  glyoxylate/hydroxypyruvate reductase A HPR2 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
106310152  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
106321159  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
106295360  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
106296704  glycerate dehydrogenase HPR, peroxisomal-like [KO:K15893] [EC:1.1.1.29]
106300516  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
106342839  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
106315620  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
106325660  ribulose bisphosphate carboxylase small chain 1A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
106341726  ribulose bisphosphate carboxylase small chain F1, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
106341727  ribulose bisphosphate carboxylase small chain F1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
106322045  ribulose bisphosphate carboxylase small chain 1A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
106325710  ribulose bisphosphate carboxylase small chain 1A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
106342891  ribulose bisphosphate carboxylase small chain F1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
106296431  ribulose bisphosphate carboxylase small chain F1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
106341944  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
106335155  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
106318812  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
106295814  glutamate--glyoxylate aminotransferase 1-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
106312468  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
106296220  LOW QUALITY PROTEIN: glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
106335201  ferredoxin-dependent glutamate synthase 2, chloroplastic-like isoform X1 [KO:K00284] [EC:1.4.7.1]
106342177  ferredoxin-dependent glutamate synthase 2, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
106317861  ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial [KO:K00284] [EC:1.4.7.1]
106342476  glutamine synthetase cytosolic isozyme 1-3-like [KO:K01915] [EC:6.3.1.2]
106328762  glutamine synthetase cytosolic isozyme 1-3-like [KO:K01915] [EC:6.3.1.2]
106320460  glutamine synthetase cytosolic isozyme 1-4-like [KO:K01915] [EC:6.3.1.2]
106327883  glutamine synthetase cytosolic isozyme 1-2 [KO:K01915] [EC:6.3.1.2]
106312454  glutamine synthetase, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
106342670  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
106298793  glutamine synthetase cytosolic isozyme 1-5 [KO:K01915] [EC:6.3.1.2]
106342963  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
106309346  glutamine synthetase cytosolic isozyme 1-3-like [KO:K01915] [EC:6.3.1.2]
106313232  glutamine synthetase cytosolic isozyme 1-4 [KO:K01915] [EC:6.3.1.2]
106295911  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
106344820  glutamine synthetase cytosolic isozyme 1-5-like [KO:K01915] [EC:6.3.1.2]
106300736  serine hydroxymethyltransferase 2, mitochondrial-like isoform X1 [KO:K00600] [EC:2.1.2.1]
106312595  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
106295709  serine hydroxymethyltransferase 6 [KO:K00600] [EC:2.1.2.1]
106312669  serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]
106300539  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
106342341  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
106308664  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
106314004  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
106312473  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
106334677  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
106335712  serine hydroxymethyltransferase 1, mitochondrial isoform X1 [KO:K00600] [EC:2.1.2.1]
106303581  glycine dehydrogenase (decarboxylating) 1, mitochondrial [KO:K00281] [EC:1.4.4.2]
106312228  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
106309609  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
106295598  dihydrolipoyl dehydrogenase 2, mitochondrial [KO:K00382] [EC:1.8.1.4]
106300045  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
106328211  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
106293072  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
106343215  glycine cleavage system H protein 3, mitochondrial-like [KO:K02437]
106331840  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
106336862  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
106340599  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
106294456  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
106307779  glycine cleavage system H protein 3, mitochondrial-like [KO:K02437]
106336587  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
106301110  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
106300109  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
106320184  D-glycerate 3-kinase, chloroplastic-like isoform X1 [KO:K15918] [EC:2.7.1.31]
106327041  formate dehydrogenase, mitochondrial-like [KO:K00122] [EC:1.17.1.9]
106319166  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
106312685  formyltetrahydrofolate deformylase 2, mitochondrial [KO:K01433] [EC:3.5.1.10]
106301714  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
106308153  formamidase [KO:K01455] [EC:3.5.1.49]
106308162  formamidase-like [KO:K01455] [EC:3.5.1.49]
106312243  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
boe00010  Glycolysis / Gluconeogenesis
boe00020  Citrate cycle (TCA cycle)
boe00030  Pentose phosphate pathway
boe00053  Ascorbate and aldarate metabolism
boe00071  Fatty acid degradation
boe00230  Purine metabolism
boe00250  Alanine, aspartate and glutamate metabolism
boe00260  Glycine, serine and threonine metabolism
boe00620  Pyruvate metabolism
boe00710  Carbon fixation by Calvin cycle
boe00750  Vitamin B6 metabolism
boe00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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