KEGG   PATHWAY: bpit00020
Entry
bpit00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Brocadia pituitae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpit00020  Citrate cycle (TCA cycle)
bpit00020

Module
bpit_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpit00020]
bpit_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpit00020]
bpit_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpit00020]
bpit_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpit00020]
bpit_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpit00020]
Other DBs
GO: 0006099
Organism
Candidatus Brocadia pituitae [GN:bpit]
Gene
BPIT_29110  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
BPIT_07360  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BPIT_29460  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BPIT_18890  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BPIT_26230  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BPIT_31240  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BPIT_02530  pyruvate:ferredoxin-oxoacid:ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BPIT_26220  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BPIT_31230  pyruvate:ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BPIT_02520  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BPIT_30450  conserved hypothetical protein [KO:K00177] [EC:1.2.7.3]
BPIT_02510  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
BPIT_31250  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
BPIT_02540  pyruvate:ferredoxin-oxoacid:ferredoxin oxidoreductase delta subunit [KO:K00176] [EC:1.2.7.3]
BPIT_29090  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BPIT_29100  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BPIT_26250  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BPIT_06780  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BPIT_26270  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BPIT_26280  succinate:quinone oxidoreductase (SQR) Type A subfamily [KO:K00242]
BPIT_30440  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
BPIT_30430  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
BPIT_26300  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BPIT_22270  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BPIT_09950  conserved hypothetical protein [KO:K01610] [EC:4.1.1.49]
BPIT_11790  conserved hypothetical protein [KO:K00162] [EC:1.2.4.1]
BPIT_27800  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpit00010  Glycolysis / Gluconeogenesis
bpit00053  Ascorbate and aldarate metabolism
bpit00061  Fatty acid biosynthesis
bpit00071  Fatty acid degradation
bpit00190  Oxidative phosphorylation
bpit00220  Arginine biosynthesis
bpit00250  Alanine, aspartate and glutamate metabolism
bpit00280  Valine, leucine and isoleucine degradation
bpit00350  Tyrosine metabolism
bpit00470  D-Amino acid metabolism
bpit00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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