KEGG   PATHWAY: brq00630
Entry
brq00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium amphicarpaeae
Class
Metabolism; Carbohydrate metabolism
Pathway map
brq00630  Glyoxylate and dicarboxylate metabolism
brq00630

Module
brq_M00012  Glyoxylate cycle [PATH:brq00630]
brq_M00621  Glycine cleavage system [PATH:brq00630]
brq_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:brq00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium amphicarpaeae [GN:brq]
Gene
CIT40_06745  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
CIT40_04665  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
CIT40_12475  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
CIT40_32600  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CIT40_27725  malate synthase G [KO:K01638] [EC:2.3.3.9]
CIT40_00130  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CIT40_16590  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CIT40_01490  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CIT40_01495  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
CIT40_00075  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CIT40_06615  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT40_09155  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT40_02960  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT40_04505  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CIT40_12350  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT40_12430  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CIT40_01215  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT40_02185  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT40_18680  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
CIT40_23070  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT40_28055  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CIT40_01220  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
CIT40_16900  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
CIT40_04560  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
CIT40_18370  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
CIT40_18775  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
CIT40_09770  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
CIT40_09780  methylmalonyl-CoA mutase family protein [KO:K01847] [EC:5.4.99.2]
CIT40_03770  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
CIT40_03775  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
CIT40_03780  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
CIT40_11445  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
CIT40_14155  catalase [KO:K03781] [EC:1.11.1.6]
CIT40_31570  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
CIT40_25385  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CIT40_27145  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CIT40_11620  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
CIT40_16060  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CIT40_18015  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CIT40_07450  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
CIT40_07455  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
CIT40_00485  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
CIT40_22195  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
CIT40_17135  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
CIT40_30065  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
CIT40_13555  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
CIT40_17450  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CIT40_20790  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
CIT40_20780  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
CIT40_16370  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CIT40_00170  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CIT40_20785  gcvH; glycine cleavage system protein GcvH [KO:K02437]
CIT40_10405  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
CIT40_10410  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
CIT40_10415  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
CIT40_28110  glycerate kinase [KO:K11529] [EC:2.7.1.165]
CIT40_09060  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CIT40_24700  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CIT40_12345  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CIT40_11470  oxalate decarboxylase family bicupin [KO:K01569] [EC:4.1.1.2]
CIT40_10205  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
CIT40_24525  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CIT40_05845  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CIT40_10215  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CIT40_05840  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein [KO:K22515] [EC:1.17.1.9]
CIT40_24530  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
CIT40_10220  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
CIT40_24535  formate dehydrogenase subunit gamma [KO:K00127]
CIT40_10225  formate dehydrogenase subunit gamma [KO:K00127]
CIT40_13495  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
CIT40_21755  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CIT40_30625  fmdA; formamidase [KO:K01455] [EC:3.5.1.49]
CIT40_10360  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
CIT40_10355  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
brq00010  Glycolysis / Gluconeogenesis
brq00020  Citrate cycle (TCA cycle)
brq00030  Pentose phosphate pathway
brq00053  Ascorbate and aldarate metabolism
brq00071  Fatty acid degradation
brq00230  Purine metabolism
brq00250  Alanine, aspartate and glutamate metabolism
brq00260  Glycine, serine and threonine metabolism
brq00620  Pyruvate metabolism
brq00710  Carbon fixation by Calvin cycle
brq00750  Vitamin B6 metabolism
brq00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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